RNA id: TU384471


Basic Information

Item Value
RNA id TU384471
length 334
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G324488
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 247960 ~ 249715 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagtgtgtgattatagagagtgtgtgttagtgtgtgattatagagagtgtgattatagagggtgtgtgttagtttgtgattatagagagtgtgtgattatagagagtgtgtgattatagagagtgtgtgagtatagagagtgtgtgattatagagagtgtgtgattatagcgagtgtgtgattatagagtgtgtgattatagagtgtgtgattatagcgcgtgtgtgattataataagtgtttgattatagagtgtgtgattatagagagtgtgtgattatagagtgtgtgattatagagagtgtgtgattatagagagtgtgtgttagtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384460 lncRNA downstream 23047 224118 ~ 224913 (-) True G324482
TU384459 lncRNA downstream 28910 218778 ~ 219050 (-) True G324481
TU384445 lncRNA downstream 41823 199459 ~ 206137 (-) False LOC113523705
TU384424 lncRNA downstream 156669 90902 ~ 91291 (-) True G324465
TU384409 lncRNA downstream 191130 56373 ~ 56830 (-) True G324450
TU384490 lncRNA upstream 47520 297235 ~ 321868 (-) True G324498
TU384511 lncRNA upstream 65684 315399 ~ 319003 (-) True G324504
TU384525 lncRNA upstream 104274 353989 ~ 354632 (-) True G324516
TU384521 lncRNA upstream 124484 374199 ~ 443951 (-) False smarcc1a
TU384573 lncRNA upstream 319874 569589 ~ 570151 (-) True G324544
XM_034297977.1 mRNA downstream 36491 205263 ~ 211469 (-) False LOC113523705
XM_034297978.1 mRNA downstream 38959 205263 ~ 209001 (-) True LOC113523705
XM_034297976.1 mRNA downstream 44223 194648 ~ 203737 (-) False azi2
XM_034297975.1 mRNA downstream 44224 194648 ~ 203736 (-) True azi2
XM_026909661.2 mRNA downstream 89381 148605 ~ 158579 (-) True eomesb
XM_034298132.1 mRNA upstream 52946 302661 ~ 331083 (-) False herpud2
XM_034298131.1 mRNA upstream 68689 318404 ~ 331083 (-) False herpud2
XM_034298130.1 mRNA upstream 77230 326945 ~ 331083 (-) True herpud2
XM_034298019.1 mRNA upstream 102172 351887 ~ 396573 (-) True slc4a7
XM_034297797.1 mRNA upstream 147317 397032 ~ 400945 (-) False pkdc
TU384497 other upstream 101023 350738 ~ 356621 (-) False slc4a7
TU384506 other upstream 101023 350738 ~ 356621 (-) False slc4a7
TU384611 other upstream 476912 726627 ~ 727634 (-) True G324579
XR_004576952.1 other upstream 797868 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 1120761 1370476 ~ 1371029 (-) True G324748

Expression Profile