RNA id: XM_034298286.1


Basic Information

Item Value
RNA id XM_034298286.1
length 3413
RNA type mRNA
GC content 0.57
exon number 28
gene id smarcc1a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 374199 ~ 454823 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttgtgcacggTTAGTTTTGATGGTGTAGCGACTCGCTGTAAGAGGAAACAATGGCGACTGCGGGAACTGCGGCGACTGCGGCGGGCGGCTCGGGCTCGGGAGGATCAGCAGCCGGTCAGGCGGGACCCGGTGCTTTGGTGGGCAGAAAAAAGGACGGAGGACCGTCGGCTAAATTTTGGGAGAGCGCTGAGACGGTTTCTCAACTCGAGACGGTTCGGCTGTGGATCGGAAAACACTACAAAAAGTATGTCCAGGCCGACTCTCCGTCCTGTAAATCGTTAGCAGGACTGGTGGTTCAGCTTCTCCAGTTCCAGGAGGACGCGTTCGGACGCAGAGTGAGCAACCCGGCCCTCACCAAACTGCCCGCAAAAAGCTTCTTGGACTTCAAAGCTGGAGGAGCTCTGTGTCACATCCTGGGATCTGCTTACAAGTTTAAAAGTGAACAGGGATGGCGACGGTTCGATCTGCAGAATCCATCCCGGATGGACAGAAACGTTGAGATGTTCATGAATATTGAGAAAACTCTCGCACAGAATAACTGTCTGACTCGACCAAACGTGTACATCGCATCCGACGTGGACCAAAAACAGGCCGGGAAACTGAAAGACATCATCAAGAGACATCAGGGCTCCATCACTGACGACAAATCCAAAGCCACACATCACATCTGTCCATCTCCAGCTCAGACGGAGGAAgagGAGTGGCTGCGTCCCGTCATGCGCAAAGACAAACAGGTGCTGGTTCACTGGGGGAATTATCCCGACagTTACGATACCTGGGTTTCCACCAGCGACGTGGACGGTGAAGTCGAGGATCCTCCGAGCTCAGAGAAACCCTGGAGGGTGCACGCCAAGTGGGTCCTGGATACGGACGCGTTTAACGAGTGGATGAACGAGGAAGATTATGAAGTAGATGAGAACAGGAAGCCGGTGAACTTCCGCCAGCGCATCTTCCCTAAAGAGGAGGAGGAGCGAAAGTCTCTGGCCGGAGGGAAGAAGAGGCGGCGCTCCCCGTCCCCCCCGAGCACCCCCGCGGAGTCCCGCAAGAAGGGCAGCAAGAAAGGGAACGCCGGGCCGCACTGGAAGCGCCGAGGTCatcgtgatgatgatgagcagGATGAAGATCTCACCAAGGACATGGAGGATCCGTCTCCTGTTCCGGGAATGGAGGAGGTTTCTCTGCCCAAAAATGTGAATCAGAAGAAGGACAGCGAGAACGTGCCGGTTAAAGGAGGAACCATGGCTGATCTGGatGAACAGGAAGACGGCTCTGTGGGCTCTGGGGGGAAGgacGATGATGAACAGGGCAAAATGGAGGTAAACCGTCTCATGGACTCCAGCGAGGATAACGTGACCGAgcaaacacatcacatcatcattcCCAGCTACTCCGCCTGGTTCGACTACAACTCGATTCATGAAATAGAGAGACGAGCCTTACCCGAGTTCTTCAATggaaaaaacaaatctaaatcCCCGGAGATatatCTAGCGTATCGTAACTTCATGATCGATACGTATCGGCTGAACCCTCAGGAATACCTCACCTCCACTTCCTGCAGACGCAACCTCACTGGAGACGTGTGTGCTGTcatgagggtgcaCGCGTTTCTGGAGCAGTGGGGTCTCATTAACTATCAGGTGGATGCAGAGAGCAGGCCGATGCCGATGGGTCCTCCACCCACACCACACTTTAACGTCCTGGCTGATACGCCATCAGGCCTCGTCCCGCTGCACCATCGCCCCCCGCAGGTTCCCTCAGCTCAGCAGATGCTCAGCTTCCCggagaaaagcaaagaaaaaccCACAGACCTGCAGAACTTTGGCCTCAGGACAGATATGTACTCCAAGAAGAACCCTAAGagTAAAGGAGGTAGCGGAACACGAGAATGGACCGAGCAGGAAACTCTGCTGCTATTAGAGGCTCTGGAGATGTACAAGGATGACTGGAACAAGGTTTCGGAGCATGTTGGCAGCCGGACGCAGGACGAGTGTATCCTTCACTTCCTGCGGCTGCCCATCGAGGACCCGTACCTGGAGAGTTCGGAGGCGTCTCTCGGACCCCTCGCCTATCAGCCCGTCCccttcagccaatcaggaaACCCCGTCATGAGCACCGTGGCCTTCCTCGCATCCGTGGTGGATCCCAGAGTGGCTGCAGCTGCCGCTAAGGCTgctctcgaggagtTCTCTCGTGTGAGGGAGGAGGTTCCAGCCGAGCTGGTTGAGGCTCATGTGAAGAAAGTTCAGGAGGCAGCGAGGAGCACGGGGAAAGTCGACCCGTCCTACGGCCTGGAGAGCAGCGGCATCGCGGGAACGGCGCCGGACGAGCCGGAGAAAACCGAAACCACAGAATCAGAGAAGATGGAAACAGATTCCGAGTCTCAGCAGGGAGAGAAGACGGAGTCTAAGGACGAGACGGAGAAAGCGAGTGAGGCAGCAGAGAAACCAGCggagggagagaaagtgaaaagtgaAGCGGCGGAGAAACCCGagggtgaggaagaggagggtgACGGAGGAGAGACGAATGAAGCGAGTGCTGCTGATGagaaagagaaggaggaggcgATGGAGGTGACggagggaggaaaggagggaGAAGAGACGACGACGGAGGAGGGCAAGAAGAAGCTGGAGCTTGATATCGGAGAGGGAAACATCGCCACCGCTGCGGCTGCCGCGCTCGCCTCCGCTGCCACCAAGGCTaagCACTTGGCAGCGGTGGAGGAGAGGAAGATCAAGTCTCTGGTGGCGCTGCTGGTGGAGACGCAGATGAAGAAGTTGGAGATTAAACTACGTCACTTCGAGGAGCTGGAGACCATCATGGACCGAGAGAAAGAGGCTCTGGAGTTGCAGAGGCAGCAGTTGCTGACGGAGAGGCAGGCGTTCCACATGGAGCAGCTGAAGTATGCGGAGATGAAAGCACGTCAGCAGATGGAGCAACAGGCAGCAGCGGCGGCCGCGGCTCAGCACGGACAGCTAGCTCCGCCCTCTCAACACGGGGCCCCACCCCCAGGACATGGAGCTCCGCCTCCTCCTCACGGTGCTCCGCCCCCATCTCATATCCCCCCTCCAGGTATGCACCCTGGGGCTggatatcccacaatgcaccacccAATGGGACCCCACCATCCTCCACAGAcagggcCGATGGTTGGACCGGGGCAGCCCATGCCAGGCCGTATGATGCCCGGTGCCCCCCCTGGTGCGATGCCCGGAGCTCCGCCAGGCGCGATGCCCCCTCTGATGGGCCCCAGACACCCCGGAGCCCCGAACGGCATGTACCCTggcccccctcctcctcctccttcttcttcttctgcacaGCCTGATGGGATACCGCCGGCTCCAGCGACCTCACTTCCTGTCCGCCCCCCtgaaaactaacacacacacagaaacccacaca

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384525 lncRNA downstream 82662 353989 ~ 354632 (-) True G324516
TU384468 lncRNA downstream 105533 234506 ~ 331761 (-) False herpud2
TU384573 lncRNA upstream 114766 569589 ~ 570151 (-) True G324544
TU384486 lncRNA upstream 115460 570283 ~ 575149 (-) False dyrk1b
TU384574 lncRNA upstream 128069 582892 ~ 583557 (-) True G324545
TU384579 lncRNA upstream 180881 635704 ~ 636105 (-) True G324549
XR_004576941.1 lncRNA upstream 202499 657322 ~ 658118 (-) True LOC117595770
XM_034298287.1 mRNA downstream 8884 404104 ~ 428410 (-) False cspg5a
XM_026911151.2 mRNA downstream 8885 404104 ~ 428409 (-) False cspg5a
XM_026911144.2 mRNA downstream 8885 404104 ~ 428409 (-) False cspg5a
XM_026911142.2 mRNA downstream 8885 404104 ~ 428409 (-) True cspg5a
XM_034298289.1 mRNA downstream 8886 404104 ~ 428408 (-) False cspg5a
XM_026911140.2 mRNA upstream 75492 530315 ~ 535250 (-) True zp3d.2
XM_034298129.1 mRNA upstream 83372 538195 ~ 544033 (-) True LOC113524795
XM_034298128.1 mRNA upstream 94237 549060 ~ 575271 (-) True dyrk1b
XM_026911130.2 mRNA upstream 143573 598396 ~ 605015 (-) True alkbh8
XM_034297808.1 mRNA upstream 143573 598396 ~ 604798 (-) False alkbh8
TU384497 other downstream 80673 350738 ~ 356621 (-) False slc4a7
TU384611 other upstream 271804 726627 ~ 727634 (-) True G324579
XR_004576952.1 other upstream 592760 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 915653 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 975109 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 1633436 2088259 ~ 2097435 (-) True G325145

Expression Profile