RNA id: TU384802


Basic Information

Item Value
RNA id TU384802
length 1975
lncRNA type sense_over
GC content 0.40
exon number 2
gene id kif13a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1403264 ~ 1451000 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAAGTTTTATCTCGGAGCACAAACTTTCAACAAACgtgaatatttttatacaatttaaTCAGATCTTTGTAGTTTTAGTGAAACTCAGACAGACAGCGTATAATTAATGAGTTGACTTTCCAGACTCTCAGACGCTGAGAAAATTAAAACCCAAATAAACAAGGGCTAATTTGCGTGTCTAATTGaatatcctgtgtgtgtgtgtgtgtgtgtgtgtgagatttgttCTTGATAGCAAATTTAAATCTCTAAAGTACTATTCAGGATTGTTGAGTCATGTAGCTGGAGGATCAGTCAAAggtataaatcacagagatgggcgtgtcttcgCGACTATAAGCGCTTGTTGTAAGGGGCGTGGCCACGCATtagcaggtcacatgaccataccATGTCTGTACGCTATACCTGAGCTAGGAGCTCGTTAACTCTTTCCTCATCAACTCAGAGACCTCCGTCACGTCTCAGACACGTCCTTTTAAACATCATCTGCATTGTATTGTAAAacatttagtttggttttgGAAGGAGACAAAAGAGTGAACGCTTCCTGAGAATTCGTTAATATCGTTAATTTGCAAATGATGAAGTACAGAAGGATcagagtattttaaaaaaaggatcaGAGTTATGGGCAATTCACCTCTCTAAGCctattgtttgttgtttttttttccaataatatAAATCTATGATTGTTGCTTCAATTCATTGAAGTCGTTGCCTTTTAAATTGATGCGTTGATCCAAATCGTCCAATCGTTACACCATCTGAAGATGAATTTAGGAAGCTTTAGTCCTCCTGATCGGCGCCCCCTAGTGCCCTACAGCGTGTGTGGAGGAGGCTTGTTATTATCAGCTAATACACCTGTAACGTATAGTGTTTAGTGGAACTGCTGTATCCGAACATCCTACTCGCAGGAGCGTCGGCCattttgaagtgtgtgtagcgataaacaaattaatcattGGCACATGtctagtgagtgagtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgaagagagtgTGTGACTGATTCTCACTTAAGTGCCATATCTTTGGTTTCAACGCCTCACACTTTTAAGATTGTGGTAAGAAGTTTGTTACAGGAAGTTGCCTTGTTTTCTTACTGGTTTTCTGAGTACTGTATCTGTGTAAAGAACTTTATTTGGGAACTGTTGCCTGAACGCTTGCACTGGAGAGACGTGTCCTGGATGCACTGAGCCTCCCGAGAGGCTCGATCCGGAGAGAGAGCTGCAAATCCGACGCATAAAAAGCACCTTGGTTCACGCCTTGTTCTGTAACGCAGGGCGAGCTCGGACTTCACCACGGACACATCGCTGACGCTGTTCGACGCGTCAGTCCCTTTTAACTGCAGCagcttttcagtttttttgaCTAATAAGTAATATTTTCTTACTTTGTAACAAGTATGTGCTAAAGAGCATTTTTATAAACGATCACATCAGTCACTTAATTTCTTTATCACTGTTTTGCATTATATCACGATGTAACACGTAGCAGTCTGGTTGTAAAGGAAACGTTACAAAGCTGCCTTCCGATTTGTCAAAAACAGGCTGATGTAATGACGCTCGCAATAACAACACTGTGTGTTAAATATCACGATCAGATCGTATAACTGATGATCAGCACATGCCTTATTGTTTTTATACTCATGCAactaaatgaatatattttttaaaaggtaaCAGGATGAGGAGAGACGGACGCGCACTGGCCTCGTGGCTGGAGGAGTCAGTACAGTTAAAGACTATTTTTTGCTGAAGAACTATCGTGGGAGTGTGTTTTAATGCTGTAACTGTTGGATGAAAGAAACCCAAGCCCTTACTCTGGAAGACAAGCTGCTCTCCTTCACGAGGACTTGTACATAGAGCTGTATTTGAACCTATATAATGTACAGAactgtatttataatgtatCAAGAAAAAATGGGTACAAAGATCTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384797 lncRNA downstream 88709 1294865 ~ 1314580 (-) False scap
TU384805 lncRNA downstream 217212 1119771 ~ 1186077 (-) True G324726
TU384810 lncRNA downstream 233958 1144586 ~ 1169331 (-) True G324731
TU384808 lncRNA downstream 275672 1126844 ~ 1127617 (-) True G324729
TU384710 lncRNA downstream 447897 887291 ~ 955392 (-) False G324649
TU384959 lncRNA upstream 160672 1565959 ~ 1568506 (-) False LOC113533106
TU384971 lncRNA upstream 263815 1669102 ~ 1674907 (-) True LOC117595768
TU384972 lncRNA upstream 263815 1669102 ~ 1674907 (-) False LOC117595768
TU384975 lncRNA upstream 263815 1669102 ~ 1674907 (-) False LOC117595768
XR_004576939.1 lncRNA upstream 266414 1671701 ~ 1674899 (-) False LOC117595768
XM_026924935.2 mRNA downstream 2323 1392716 ~ 1400966 (-) True grinab
XM_026924542.2 mRNA downstream 12030 1387757 ~ 1391259 (-) True LOC113532867
XM_034298290.1 mRNA downstream 16240 1369754 ~ 1387049 (-) True smpd5
XM_026923904.2 mRNA downstream 34612 1361057 ~ 1368677 (-) True gpatch3
XM_026924586.2 mRNA downstream 43801 1348029 ~ 1359488 (-) True sacm1lb
XM_026924540.2 mRNA upstream 47738 1453025 ~ 1454553 (-) True LOC113532865
XM_034298135.1 mRNA upstream 53136 1458423 ~ 1473105 (-) True ptdss1a
XM_034297825.1 mRNA upstream 70256 1475543 ~ 1481875 (-) True LOC113532544
XM_034297826.1 mRNA upstream 81091 1486378 ~ 1529401 (-) True zgc:158766
XM_034298076.1 mRNA upstream 151729 1557016 ~ 1566680 (-) True LOC113533106
TU384829 other downstream 32260 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 301172 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 675655 726627 ~ 727634 (-) True G324579
TU384497 other downstream 1046668 350738 ~ 356621 (-) False slc4a7
TU384835 other upstream 24645 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 682972 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 1832414 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 3558330 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 3558330 4963617 ~ 4977527 (-) False ubr5

Expression Profile