RNA id: XM_034298254.1


Basic Information

Item Value
RNA id XM_034298254.1
length 3990
RNA type mRNA
GC content 0.56
exon number 22
gene id smg5
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1899626 ~ 1919710 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATACAACGCAAGTCTCGCGAGACCGGAGCGGTCGCTGTGGAAAAATGGCCGCTCACGGAACGATTCCTGGAACGGGGAACAACATCAAATACAGTCCGGGGCGTGACAGCTGACCTACGGCGAACCCGGTTTTGTCCGTCCTTTACCTGACTTCCGAACGGATGGGTAAAGAGGTCTGCGACAAGGGGCATAAGGAACCACAGCGAGTCCGTTTAAGTAGTCGGAGGAAGCAGGGAGCTAGCTAGAAAGCTAACGTTGTCCaacgttagctagcttgctagctaaccTAAGACAAGGCGCGCGAGCCTGAATCAGCGCCTTGGGTTTCGGTGTGCTAATCTAAAGCTAGCCGAAAACAGCCGCAGGAATGAGCGGACCGGGACAAGACAGCGAGCCAGAGGCCAAAATCCTTCACATCAAGCGGCTGTACAGGGCCGTGGTGGAATCTGTACACAAGCTGGATGTGATCATCGGCAGCAAATAGAgtttttaaaaaatttttattaacgTCCTTCCTGCCAGGCTGCGTgagctgtgtgtaaagctgatGTTCTTGCACCCGGTGGATTACGGCCGCAAGGCAGAGGAGCTGCTCTGGAGGAAGGTCTACTACGAGGTCATTCAAGTCATCAAGACCAACAAGAAGCACATCCACAGCCGCAGTGCTCTGGAGTGCGCTTACAGGACTCACCTGATCGCTGGAGTTGGCTTCTACCAGCACCTCCTGCTCTACATCCAGTCCCACTACCAGCTGGAGCTGCAGGACTGCATCGACTGGACGCACGTCACCGACCCGCTCATCGGTCGTAAGAAACCTGTGTCTGCCACACCTAAGGAGATGGAATGGGCACAGATGGCATGTCATCGATGTCTCGTGTACCTGGGTGACCTCGCACGGTACCAGAACGAGCTGGCAGGCGTGGAGGCCGAGCAGCTGGCCGAGCGATTTTACCACCAGGCCCTGTCAGTCTCGCCAACCATCGGAATGCCTTTTAATCAGCTAGGTACTCTGGCTGGAAGTAAATTTTATAACGTAGAAGCGACGTACTATTACCTGCGCTGCATTCAGTCCGAGACGCCCTTCGAGGGAGCCTACGGAAACCTGAAGCGTCTGTTTGATAAAGCGGCCAAGATGTACCATCAGGTGAAGAAACAAGAGATGAAGAAGCTCTCACCATCACGCCAGAGATCAAAGGACATCAAGCGACTCCTCGTAAGCTTCATGTACCTCCAAAGTTTACTGCAGCCCAAGAACAGcGTGATTGACACGGAGCTGACGTCGCTGTGCCAGTCGGTCCTGGAGGACTTTAACCTGGTGCTGTTCTACCAGCCGACGCCGAGTCACGGCAGCCAGTCCATCAGCGAGGAGGAAGACGAGCACGATCAGGCCTGCAGCGTGCTGCCCGACAGCCTGGTCTTCAAAATGGTGGTGATCTGCCTTATGGTGGTGCACAGCTTAAAGAGAGGAGGGTCTAAGCAGTACAGCGCCTCCATCGCCTTCACACTAGCACTTTTCTCCCATCTGGTGAACCACGTGAACATCCGGCTACAAGCCGAACTCGAACAAGGAGAGAGCGACGTCCCGACGTTACGCACCGACGCCACGGATGACACTGATCCTAGAGAGCAGACAAACACACTTCCCTCAGAGGACAGACCGCTGCAGAACGGCTctatagaagaagaagacggaGACGACGAGAATGATGAAGACGAGCTGAAAGGCGACAGGACGGCAGTTTCTAAGAAAGGCTCGGCGAAGAAGAGCGGGGAGGAGAAGCCGAAACAGAAGAGGAAATACTCGCGTCTGTCCATGCTAAGGCGACGGCGCTGCGCTCGCAACGAGGACGAGAGCGACCTGAGCGAAGGTTTCGAGAGCGACGAAGAGGAGGACGAAGAGACTCAGAGAGCGGACGGTTCAGGAGTCCCTGCAAACTCTTCTCTGGGGAAAGAGGGACGCCGGGACACGGCGGGAGAGCAGGGCGTCTGGGAGAGTGGatcagaagaggaggaggaggaggaggagggcgGCACCGCGTTCGACGTTGAGACAGACTCCGATATGAACAGCCAGGAGTCGCGCTCCGATCTGGAGGACATGGAGGACGCGGCAAGTCCGGCGCAGGAGCAGCAACccgaggaggaggaagaggaggagaaggcaCGTCCGTCGCGTGATGAAGGCTCCACCCCTCCTGCCACCAACGGCCCGCTGCTGTCCAGCGACCCGAGCATCAGCAGCAACCTGCAGGCCATGTCCTCACAGCTCTTCCAGGCCAAACGCTGCTTCCGTCTGGCTCCAACCTTCAGCAACGTCCTGCTGAGACCCTCACACACATCCAACACAGCCTCCGATTCCGTCCCCTCGCAggaagccacgccccctcccGGAGACACGCCCAGTAACACAAGTCCAGAGATCGCTAATGGAACCAATGATGACGacgTCGACACAGAGGACAGCGAGCAcagcaaccaatcagatcacagcgAGAAAACGCTTTCAGAGAGACTCGAGATTCTGACCAACCAAGGCCTCATTCAGGTGGTGAAGGTCTTCGTGGATTGGCTGAGGACAAATACAGACATCATTCTCATGTGTGCACAGAGTTCTCAGAGTTTGTGGAATCGCCTCTCAGTGCTGCTAAACTTACTGCCTGATGGGAACAAGGTGTTGGAAGCAGATCTGGGTCTGAAGAAGGAGGTGAGGGATCTGCTGGCCAGCAGCGAGCAGCCGGACCTGGTGCAGACGGTGCTGCTGCCGGAGGACCAGGCGCTACGCCACCTACCCGCCCTGAACCTGGCACACCGCCGCCTCGACTTCACTCACCACAGAGCCAGCCTGAGCCCGCTGCAGGAGTGTGTGGTGCGCTTGTGCTGCATCCGCAGCTTCGGCCACTTCCTCACCGGTCTCCAAGGCAACGTGCTGCACTACAACCCGGAGGCGGGGATTTTCACcagcatcagccaatcagagcaggaGAACATGGTTCAGCAGGCGAAGGCGCAGTTCCGCATGGCTGAAGAGGAAGCGCGCAGGAACAGGCTCATGAGGGACATGGCACAACTCCGTCTGCAGttAGAGGTGTCCCAGCTGGAAGGCAGTCTTCAGCAACCCAAGGCCCAGTCGTCCATGTCTCCGTACCTGGTGCCCGACACGGGAGCTTTGTGCCAACACCTGAACCTGCTGCGGCAGCTGGCAGCAAGCGGctgcttcatcatcatcatcccacGCACAGTCATTGATGGACTCGATGTCCTGAAGAAGGAGAATCCTGGCGCGAGGGATGGCATCCGATTTTTGGAGTCTGAGTTTAGAAAAGGGAATCGATATATCCGGTGTCAGAAAGAGTCCGGGAGGAGTTTTGAGAGGGATAAGCTGAAAAGACAGGACATTGAAGCCTGGCACCTTTACAAAATGGTGGACAGCTGTCGCCAGCTGACGGGCTCTCAGAGCGGAGGAGACGAGGACACGGCCGGCATGGTGACCATCCTGACAGGGTACGCGGTGGAGGAGCTCGCCGACCGCTCCGCCCCCATGAAGTCGGCCATCCAGGCGGTGGCGACGGCGGGAATGGAGCTGAAGAACATTGTGGAATTTTACCGGCAGTGGAAGGAAATGGGCTGAAAGAGACGGAGGGACAGGGGACTCAGCCCGGCACTCAGCTAATCACACATCgactccctctctccttctctctctctctccttctctctctctctccctcattttactgctctgtctgtgtctctgcatCTCCAGGGTTTAATAAAAAACTCAGAATAGAGAAGGAAAGACGGAGGATGATACGGAAGTGTTTGGAAAAGCACCGAAGCGGGGCcttaaaaaaaactccacaaaaggtcggagtgagagagagagatgtagcaGCGCTAAAAGTGTGCCTGGTTTTGTCATGACCAGATGAACGAGtatgagaaaacacacacacacacacacacacacacacacacaaagacaaaaacaa

Function

GO: NA

KEGG:

id description
K11125 SMG5, EST1B; protein SMG5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385013 lncRNA upstream 160371 1735619 ~ 1739255 (+) True G324889
TU384946 lncRNA upstream 231783 1667560 ~ 1667843 (+) True G324842
TU384934 lncRNA upstream 243765 1655128 ~ 1655861 (+) True G324831
TU384935 lncRNA upstream 246036 1652671 ~ 1653590 (+) True G324832
TU384931 lncRNA upstream 248688 1650037 ~ 1650938 (+) True G324830
TU385089 lncRNA downstream 7370 1927080 ~ 1932326 (+) True G324947
TU385237 lncRNA downstream 73546 1993256 ~ 2011981 (+) False G325076
XR_004576937.1 lncRNA downstream 80427 2000137 ~ 2001004 (+) True LOC117595767
TU385235 lncRNA downstream 89624 2009334 ~ 2011981 (+) True G325076
TU385253 lncRNA downstream 100474 2020184 ~ 2020388 (+) True G325089
XM_026924186.2 mRNA upstream 1236 1796355 ~ 1898390 (+) False syngap1b
XM_026924188.2 mRNA upstream 1236 1796355 ~ 1898390 (+) False syngap1b
XM_026924181.2 mRNA upstream 3669 1796355 ~ 1895957 (+) False syngap1b
XM_026924182.2 mRNA upstream 3669 1796355 ~ 1895957 (+) False syngap1b
XM_026924183.2 mRNA upstream 3669 1796355 ~ 1895957 (+) False syngap1b
XM_026924081.2 mRNA downstream 5872 1925582 ~ 1943290 (+) True paqr6
XM_026923877.2 mRNA downstream 94901 2014611 ~ 2019052 (+) True rbm8a
XM_026924481.2 mRNA downstream 101705 2021415 ~ 2055739 (+) True otud7b
XM_026924482.2 mRNA downstream 101705 2021415 ~ 2055739 (+) False otud7b
XM_026924483.2 mRNA downstream 124075 2043785 ~ 2055739 (+) False otud7b
TU384187 other upstream 736012 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 889403 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 1093098 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 1151151 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1289617 607612 ~ 610009 (+) False G324161
TU385279 other downstream 222796 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 290512 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 290512 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 645990 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2091700 4011410 ~ 4013538 (+) False hamp

Expression Profile