RNA id: TU385155


Basic Information

Item Value
RNA id TU385155
length 471
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G325003
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1897711 ~ 1898181 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAAATGTCTGCCCTTTTCATAAAAGATAATTTTTTGGGGTGGGGCTTATGGCTTGTCAAGGAGAATGGATATGATTTTCTTATGGCTGACAAAGGTCAAATGAAGATTTAGCAGAAGGAGGCACATCATGGGAACTCCATCTATTTCCAGGgattaaagataaaataaattattttaaaaagaaaacaagaaaagcaGGGAAGGGGAAAAAGTGTTAGGTGTACAAAAGGTCAATAGAATAAATTGGGACAGTAAATATCTCGAGGGGTTGACCTTATAAACGGATTCATCTGCAGCTCAAGGcgagcctacacacacacacacacacacacacacacacacacacacacacacacacactggagcacTGAAAACACCCAGCTGTAAGAATCAACAGCCATGAAGATGAAAATTAATCAGAAATATTGTTATATTCCGTATATAgataatatatagatatatacaaaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385131 lncRNA downstream 149703 1747657 ~ 1748008 (-) True G324980
TU385117 lncRNA downstream 172947 1724010 ~ 1724764 (-) True G324970
TU384975 lncRNA downstream 222804 1669102 ~ 1674907 (-) False LOC117595768
TU385208 lncRNA upstream 8762 1906943 ~ 1948211 (-) True G325056
TU385210 lncRNA upstream 21090 1919271 ~ 1920472 (-) True G325058
TU385254 lncRNA upstream 121999 2020180 ~ 2020405 (-) True G325090
TU385304 lncRNA upstream 157002 2055183 ~ 2140101 (-) False LOC113532493
XR_003403348.2 lncRNA upstream 241806 2139987 ~ 2142077 (-) True LOC113532493
XM_026924432.2 mRNA downstream 134305 1735617 ~ 1763406 (-) False rgl2
XM_026924431.2 mRNA downstream 134305 1735617 ~ 1763406 (-) True rgl2
XM_026924433.2 mRNA downstream 142698 1735617 ~ 1755013 (-) False rgl2
XM_026924728.2 mRNA downstream 179118 1714275 ~ 1718593 (-) True si:dkey-33i11.1
XM_034298233.1 mRNA downstream 189465 1686703 ~ 1708246 (-) False hpn
XM_026924079.2 mRNA upstream 54649 1952830 ~ 1976952 (-) False ntrk1
XM_026924078.2 mRNA upstream 54649 1952830 ~ 1976952 (-) True ntrk1
XM_026924695.2 mRNA upstream 112008 2010189 ~ 2011797 (-) True LOC113532949
XM_034297949.1 mRNA upstream 112008 2010189 ~ 2011739 (-) False LOC113532949
XM_026924301.1 mRNA upstream 369829 2268010 ~ 2272046 (-) True tmem176l.1
TU384835 other downstream 446995 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 526682 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 795594 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 1170077 726627 ~ 727634 (-) True G324579
TU384506 other downstream 1541090 350738 ~ 356621 (-) False slc4a7
TU385328 other upstream 190078 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 1339520 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 3065436 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 3065436 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 3931293 5829474 ~ 5978379 (-) False zfpm2a

Expression Profile