RNA id: TU385235


Basic Information

Item Value
RNA id TU385235
length 1766
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G325076
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1993256 ~ 2011981 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaaaaattaaGTGAATTTTGAATCAGTGAAAAAGTCAcaggagaaatgaaatgaatcatgttgaaaaaatcatgtgaaaaatagaTTAATCATGTGAGAGACATCACCTGAAAAGTTAAtcatgtggagaaaaaaatgacatgaaaataaaatgaataatggGGGGTTTGTTGCCTTACATATGAAAAACGagtcagtgaaaaaaaattaatttgggggaaaaaagacgtgaaaatgaatcagtgaaaaagaatcatgtgaaaaatagaTGAATCATCTGAGAAACAgcacatgaaaaatgaatcatgtagtaaaacaaatcacatgaaaaaaaagaatcatgtcTGAGggaattacatgtgaaaaatgaatcaataaaaacatcatgtaaaaaataaatgaatcaagtggagaaaaaattcacatgtgaaataaatgtatcatggagacaaaaaaatcacatccaTGAAAAACAGATGAGTCATGTGACACATCAGGcggaaataaatgaaacatgggGGAGGATTCAtatgagaaaatgaatcagtgaaaaattaacgtgaaaataaattaattatgtgAATGAAACATAacgtgtgtaaaaaaaaaaagggtgtaaATTTCAGTTGCTTTTAGATTCCCATTATAAGTAAGTTTAGTTAGtgttaaatatgttttcttttttagtgaAGAGCAACAGCTTgaaatataatcacacacacacacacacacacacactatacatgcAGTGGTTagggtttaaaaaaaggttagagttttcctttaagctaGCACAACCTAgctgataaacacacaaacatgcgaATAGACAGTAATAATAGTCAACACAAATGTAAAGCCTTTCAACCCCTTTATTGCTTCAGATAGGTGAGTGATGTCAGTCACAGGGCGGTGGTGATTTCCCATCAggcttttttcagtgttttgtttgttttttactgaGGGGGCAGGATGGCCTTGGTCTGATCAACCACGAACCTGAGCATGTCCTCGATCTGGCTCTGCATCAGGTTGGTGTAGGGGGCGATCTGAGCGCGGACGGAGGCGGCCAGAGGCTCGATCTGCTCCTCGATGTTGCTGGAGAGGGGCTTCAGCTGCTCCTGGAGCTTCTCAACCACGGGCTGGAGCTGGGCTCTGCTCTCCTCCATGTAAGccctgaacaaacacacacgcTTGGCCTTGTTGGCCAGCTCAGGGGCCTCGAGGGCTTTAAGGTTTTGGACGAGGTCCTGGAAGTAACTGGCGATCTTTTCAACCTCAGGAGGCATTTCAGGACTTTCTCTCTTGACCAGGCTGGCAGCTTGGGAGCGATGGCCAGCGCGATGACGAGGGCGGCGATGAGGGAGAACTTCATGGCTGCAGACTGAGCAAGGTTTGCCTaggatataaacctgtggttacTAGTGTAAATACAGAGAATATGGATGAAATTCTGAAGTAAAATTCAATCTAAATATGTCCATAAGAATGCAAAATGACTTCTTACCTTCACTCCTGAATGTCTAGGACCTGATGGTGCGTTCTTTCAGGAGCCAGACCTTTTTATAGCAGCTCCAGAGGTCAAAGGATGATAACGGGTTGACGACATCAGCCTGATGAAGTGTGTAAATGCTGTGTTGGCTGCCGAACCTTGAGGCTTTACTTGACACTGAGGTGATCGAGTCAAAGTTCAACTATCTGAACCCCccaccctctttctctctctgtctctctctttcactttatcatttttaaatcatgaaaT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576937.1 lncRNA upstream 8330 2000137 ~ 2001004 (+) True LOC117595767
TU385089 lncRNA upstream 77008 1927080 ~ 1932326 (+) True G324947
TU385084 lncRNA upstream 106637 1899643 ~ 1902697 (+) False smg5
TU385013 lncRNA upstream 270079 1735619 ~ 1739255 (+) True G324889
TU384946 lncRNA upstream 341491 1667560 ~ 1667843 (+) True G324842
TU385253 lncRNA downstream 8203 2020184 ~ 2020388 (+) True G325089
TU385460 lncRNA downstream 322898 2334879 ~ 2335106 (+) True G325247
TU385483 lncRNA downstream 384692 2396673 ~ 2396887 (+) True G325268
TU385486 lncRNA downstream 388489 2400470 ~ 2400684 (+) True G325271
TU385672 lncRNA downstream 555998 2567979 ~ 2569739 (+) True G325435
XM_026924081.2 mRNA upstream 66044 1925582 ~ 1943290 (+) True paqr6
XM_034298254.1 mRNA upstream 89624 1899626 ~ 1919710 (+) True smg5
XM_026924189.2 mRNA upstream 113377 1846686 ~ 1895957 (+) True syngap1b
XM_026923877.2 mRNA downstream 2630 2014611 ~ 2019052 (+) True rbm8a
XM_026924481.2 mRNA downstream 9434 2021415 ~ 2055739 (+) True otud7b
XM_026924482.2 mRNA downstream 9434 2021415 ~ 2055739 (+) False otud7b
XM_026924483.2 mRNA downstream 31804 2043785 ~ 2055739 (+) False otud7b
XM_034298164.1 mRNA downstream 47559 2059540 ~ 2091481 (+) True mtmr11
TU384187 other upstream 845720 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 999111 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 1202806 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 1260859 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1399325 607612 ~ 610009 (+) False G324161
TU385279 other downstream 130525 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 198241 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 198241 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 553719 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 1999429 4011410 ~ 4013538 (+) False hamp

Expression Profile