RNA id: TU385253



Basic Information


Item Value
RNA id TU385253
length 205
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G325089
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2020184 ~ 2020388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


agcgtggctgtggggatttgtgttcattcagctacaagagcattagtgagatcaggcactgatgttgggtaaggagtctccagttccagttcttcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacagggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU385237 lncRNA upstream 8203 1993256 ~ 2011981 (+) False G325076
TU385235 lncRNA upstream 8203 2009334 ~ 2011981 (+) True G325076
XR_004576937.1 lncRNA upstream 19180 2000137 ~ 2001004 (+) True LOC117595767
TU385089 lncRNA upstream 87858 1927080 ~ 1932326 (+) True G324947
TU385084 lncRNA upstream 117487 1899643 ~ 1902697 (+) False smg5
TU385460 lncRNA downstream 314491 2334879 ~ 2335106 (+) True G325247
TU385483 lncRNA downstream 376285 2396673 ~ 2396887 (+) True G325268
TU385486 lncRNA downstream 380082 2400470 ~ 2400684 (+) True G325271
TU385672 lncRNA downstream 547591 2567979 ~ 2569739 (+) True G325435
TU385717 lncRNA downstream 623653 2644041 ~ 2647583 (+) True G325462
XM_026923877.2 mRNA upstream 1132 2014611 ~ 2019052 (+) True rbm8a
XM_026924081.2 mRNA upstream 76894 1925582 ~ 1943290 (+) True paqr6
XM_034298254.1 mRNA upstream 100474 1899626 ~ 1919710 (+) True smg5
XM_026924189.2 mRNA upstream 124227 1846686 ~ 1895957 (+) True syngap1b
XM_026924481.2 mRNA downstream 1027 2021415 ~ 2055739 (+) True otud7b
XM_026924482.2 mRNA downstream 1027 2021415 ~ 2055739 (+) False otud7b
XM_026924483.2 mRNA downstream 23397 2043785 ~ 2055739 (+) False otud7b
XM_034298164.1 mRNA downstream 39152 2059540 ~ 2091481 (+) True mtmr11
XM_026924609.2 mRNA downstream 48587 2068975 ~ 2091481 (+) False mtmr11
TU384187 other upstream 856570 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 1009961 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 1213656 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 1271709 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1410175 607612 ~ 610009 (+) False G324161
TU385279 other downstream 122118 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 189834 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 189834 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 545312 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 1991022 4011410 ~ 4013538 (+) False hamp

Expression Profile