RNA id: XM_026924678.2


Basic Information

Item Value
RNA id XM_026924678.2
length 1279
RNA type mRNA
GC content 0.46
exon number 3
gene id bola1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2142192 ~ 2144525 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCTGTTCGGCGTGATGACGTTTAATGTCCTCGACAACCTCTGTTGTCCCATTTAGCCACTTCTTAGCAACCGCCTTCTTCAAAACAcgtaaaagctttaaaaaatcacaataaaaagTGGGGTATTACTGACATATTTTATGTCATTGAATAAAacgtgaaaatatcttgagcaTGTGTTAACCACAACAGACCTTATTTCAGGCATTTAACCAaaaacaaccatttttttttaaaacaacgtTTTTGGGTTCAGTTCCCCTTTTGGCCACTTGGCGGCGgcggtgtgttttattttttccggCGCCGCAGCAACGAAGAAGAGCAACTGAGTCTCTTGTGCTTGTCtgaagaagacgaagaagaagtGTGATAACGTGAGGTCTGCTGTGGCCGTCCTCTCGCTCCTGGGTTACTGATGCTGTCCCGTGTTTGCCGCTTCATCCATTCCTCCTCCGTCGCTCTCTCCTCATCCAGAGGTTCATCGCGTCTCATGGAAGCTGCTTCCAGTCGGCCAGTCGAGGCTTCCATTCGCACCAAACTGACTCAGGGTCGACCCGAGCACCTGGAGGTGCTGAACGAGAGCCACATGCATGCCGTGCCTCCGGGCTCTGAGTCGCACTTCAGGGTGCTGGTGGTGAGCTCTCGCTTCGAGGGCTTGTCGCTGCTGCAGCGTCACCGCCTGGTCAACGAGACCCTGAGCCACGAGCTGAGCACCAGCGTTCACGCTCTCGCCATCCAGGCCAAGACGCCCGAGCAGTGGAGCAGCAACCCGAGCGTGGCCAAGAGCCCGCCCTGCCTCGGAGGATCCAAACACGACAGCACGGTGGCGGAGAAGCTCAAGTCGGGACTTGACTGATCTGATCCTGACCCTGAGAACTTTCCTTCCAGAAAACACTTGatagaaatgtttaaatttactgcaatttatttaataataagatTTGGAGAGCGGCAGGTAGCAGTTCAGTAGTGATTGAGCTCTGTGTGATTTGTTTCCGCGTGTGTTGTCTATGTTTTGTTGGACTTTGAACACGTCACACTGTACAATTATTCTGATTTCCCATGTCCTTCTGattgtctttaaaaatgtagcaGATGATTAAAACGTTGGAAATCCATGAACAAAAACGTTTACAATGATTCTTTTTGTgaaaattcataaaatattgaaaaatatttgtagtGGAACAATTATGCATTCATCTGTTGTCCTGTGAAGACATGTCTATGTTGTTATGAATGAcctcaaaataaaatgaacaaaatgaacaaaa

Function

GO: NA

KEGG:

id description
K22066 BOLA1; BolA-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385253 lncRNA upstream 121804 2020184 ~ 2020388 (+) True G325089
TU385237 lncRNA upstream 130211 1993256 ~ 2011981 (+) False G325076
TU385235 lncRNA upstream 130211 2009334 ~ 2011981 (+) True G325076
XR_004576937.1 lncRNA upstream 141188 2000137 ~ 2001004 (+) True LOC117595767
TU385089 lncRNA upstream 209866 1927080 ~ 1932326 (+) True G324947
TU385460 lncRNA downstream 190354 2334879 ~ 2335106 (+) True G325247
TU385483 lncRNA downstream 252148 2396673 ~ 2396887 (+) True G325268
TU385486 lncRNA downstream 255945 2400470 ~ 2400684 (+) True G325271
TU385672 lncRNA downstream 423454 2567979 ~ 2569739 (+) True G325435
TU385717 lncRNA downstream 499516 2644041 ~ 2647583 (+) True G325462
XM_026924599.2 mRNA upstream 2194 2104788 ~ 2139998 (+) True sv2a
XM_034298164.1 mRNA upstream 50711 2059540 ~ 2091481 (+) True mtmr11
XM_026924609.2 mRNA upstream 50711 2068975 ~ 2091481 (+) False mtmr11
XM_026924481.2 mRNA upstream 86453 2021415 ~ 2055739 (+) True otud7b
XM_026924812.2 mRNA downstream 24193 2168718 ~ 2183436 (+) True nr2f5
XM_026924910.2 mRNA downstream 60321 2204846 ~ 2215410 (+) True LOC113533074
XM_026924914.2 mRNA downstream 60326 2204851 ~ 2208505 (+) False LOC113533074
XM_026924913.2 mRNA downstream 60330 2204855 ~ 2208505 (+) False LOC113533074
XM_026924912.2 mRNA downstream 65697 2210222 ~ 2215410 (+) False LOC113533074
TU384187 other upstream 978578 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 1131969 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 1335664 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 1393717 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1532183 607612 ~ 610009 (+) False G324161
XR_003403389.2 other downstream 65697 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 65697 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 421175 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 1866885 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 2776455 4920980 ~ 4923681 (+) True fabp10a

Expression Profile