Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU385460 |
| length | 228 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G325247 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 2334879 ~ 2335106 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005102 | signaling receptor binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU385253 | lncRNA | upstream | 314491 | 2020184 ~ 2020388 (+) | True | G325089 |
| TU385237 | lncRNA | upstream | 322898 | 1993256 ~ 2011981 (+) | False | G325076 |
| TU385235 | lncRNA | upstream | 322898 | 2009334 ~ 2011981 (+) | True | G325076 |
| XR_004576937.1 | lncRNA | upstream | 333875 | 2000137 ~ 2001004 (+) | True | LOC117595767 |
| TU385089 | lncRNA | upstream | 402553 | 1927080 ~ 1932326 (+) | True | G324947 |
| TU385483 | lncRNA | downstream | 61567 | 2396673 ~ 2396887 (+) | True | G325268 |
| TU385486 | lncRNA | downstream | 65364 | 2400470 ~ 2400684 (+) | True | G325271 |
| TU385672 | lncRNA | downstream | 232873 | 2567979 ~ 2569739 (+) | True | G325435 |
| TU385717 | lncRNA | downstream | 308935 | 2644041 ~ 2647583 (+) | True | G325462 |
| TU385973 | lncRNA | downstream | 736743 | 3071849 ~ 3072073 (+) | True | G325697 |
| XM_026924006.2 | mRNA | upstream | 1155 | 2329248 ~ 2333724 (+) | True | LOC113532585 |
| XM_026924304.2 | mRNA | upstream | 10813 | 2318318 ~ 2324066 (+) | False | LOC113532738 |
| XM_034297882.1 | mRNA | upstream | 10813 | 2320170 ~ 2324066 (+) | True | LOC113532738 |
| XM_026924303.2 | mRNA | upstream | 10813 | 2321579 ~ 2324066 (+) | False | LOC113532738 |
| XM_026924295.2 | mRNA | upstream | 18369 | 2313664 ~ 2316510 (+) | True | LOC113532733 |
| XM_026924439.2 | mRNA | downstream | 4347 | 2339453 ~ 2349519 (+) | True | ubqln4 |
| XM_026924622.2 | mRNA | downstream | 18998 | 2354104 ~ 2356216 (+) | True | lamtor2 |
| XM_026924736.2 | mRNA | downstream | 23209 | 2358315 ~ 2362999 (+) | False | rab25b |
| XM_026924737.2 | mRNA | downstream | 23222 | 2358328 ~ 2362999 (+) | True | rab25b |
| XM_034297943.1 | mRNA | downstream | 29647 | 2364753 ~ 2372440 (+) | True | rab11al |
| XR_003403389.2 | other | upstream | 120580 | 2210222 ~ 2214299 (+) | False | LOC113533074 |
| XR_003403390.2 | other | upstream | 120618 | 2210222 ~ 2214261 (+) | False | LOC113533074 |
| TU385279 | other | upstream | 190368 | 2142506 ~ 2144511 (+) | False | bola1 |
| TU384187 | other | upstream | 1171265 | 1118268 ~ 1163614 (+) | True | G324258 |
| XR_004576993.1 | other | upstream | 1324656 | 957125 ~ 1010223 (+) | False | cpne4a |
| TU385671 | other | downstream | 230594 | 2565700 ~ 2569739 (+) | False | G325435 |
| TU386582 | other | downstream | 1676304 | 4011410 ~ 4013538 (+) | False | hamp |
| TU386810 | other | downstream | 2585874 | 4920980 ~ 4923681 (+) | True | fabp10a |
| TU386814 | other | downstream | 2589680 | 4924786 ~ 4930154 (+) | True | srsf10a |
| TU387482 | other | downstream | 2997162 | 5332268 ~ 5338251 (+) | True | G326997 |
