Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403392.2 |
| length | 1005 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 5 |
| gene id | LOC113533076 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 2215470 ~ 2238076 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003403348.2 | lncRNA | downstream | 73393 | 2139987 ~ 2142077 (-) | True | LOC113532493 |
| TU385304 | lncRNA | downstream | 75369 | 2055183 ~ 2140101 (-) | False | LOC113532493 |
| TU385254 | lncRNA | downstream | 195065 | 2020180 ~ 2020405 (-) | True | G325090 |
| TU385208 | lncRNA | downstream | 267259 | 1906943 ~ 1948211 (-) | True | G325056 |
| TU385210 | lncRNA | downstream | 294998 | 1919271 ~ 1920472 (-) | True | G325058 |
| TU385539 | lncRNA | upstream | 14385 | 2252148 ~ 2255378 (-) | True | G325311 |
| TU385586 | lncRNA | upstream | 77369 | 2315132 ~ 2333757 (-) | True | G325351 |
| TU385591 | lncRNA | upstream | 96689 | 2334452 ~ 2334651 (-) | True | G325356 |
| TU385576 | lncRNA | upstream | 110542 | 2348305 ~ 2349582 (-) | False | G325343 |
| TU385578 | lncRNA | upstream | 110542 | 2348305 ~ 2372802 (-) | True | G325343 |
| XM_026924695.2 | mRNA | downstream | 203673 | 2010189 ~ 2011797 (-) | True | LOC113532949 |
| XM_034297949.1 | mRNA | downstream | 203731 | 2010189 ~ 2011739 (-) | False | LOC113532949 |
| XM_026924079.2 | mRNA | downstream | 238518 | 1952830 ~ 1976952 (-) | False | ntrk1 |
| XM_026924078.2 | mRNA | downstream | 238518 | 1952830 ~ 1976952 (-) | True | ntrk1 |
| XM_026924431.2 | mRNA | downstream | 452064 | 1735617 ~ 1763406 (-) | True | rgl2 |
| XM_026924301.1 | mRNA | upstream | 30247 | 2268010 ~ 2272046 (-) | True | tmem176l.1 |
| XM_034298047.1 | mRNA | upstream | 97710 | 2335473 ~ 2339983 (-) | True | si:dkey-152b24.7 |
| XM_026924442.2 | mRNA | upstream | 97710 | 2335473 ~ 2339944 (-) | False | si:dkey-152b24.7 |
| XM_026924441.2 | mRNA | upstream | 97710 | 2335473 ~ 2337973 (-) | False | si:dkey-152b24.7 |
| XM_034298048.1 | mRNA | upstream | 97710 | 2335473 ~ 2337743 (-) | False | si:dkey-152b24.7 |
| TU385328 | other | downstream | 118035 | 2088259 ~ 2097435 (-) | True | G325145 |
| TU384835 | other | downstream | 764754 | 1429932 ~ 1450716 (-) | False | kif13a |
| TU384829 | other | downstream | 844441 | 1370476 ~ 1371029 (-) | True | G324748 |
| XR_004576952.1 | other | downstream | 1113353 | 1047583 ~ 1102117 (-) | True | nek11 |
| TU384611 | other | downstream | 1487836 | 726627 ~ 727634 (-) | True | G324579 |
| TU386070 | other | upstream | 999938 | 3237701 ~ 3239147 (-) | False | LOC113532533 |
| TU387191 | other | upstream | 2725854 | 4963617 ~ 4977453 (-) | False | ubr5 |
| TU387192 | other | upstream | 2725854 | 4963617 ~ 4977527 (-) | False | ubr5 |
| XR_003403372.2 | other | upstream | 3591711 | 5829474 ~ 5978379 (-) | False | zfpm2a |
| TU388042 | other | upstream | 3638333 | 5876096 ~ 5978268 (-) | False | zfpm2a |
