RNA id: TU385578


Basic Information

Item Value
RNA id TU385578
length 1739
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G325343
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2348305 ~ 2372802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGATTTGTGCATCAACATAAATTCCCTTCTTACATTTCATCCCTTCATATATGAATGCAATTAATGTTAGAAAAATAagccccttttttttcttctccatttCACTTTTGAGTTTCTTTATAAACATGTGTTACGAAACCAGAACAAGATGGAAGCTCCCAAGGAGAGATTTGTGTTTTCCCCAGATTACTAGACAATCATTTAATTTAGCATTTCCAATTTTTGGTGCAACAATGCAGTATTTAATCTTCTAGGAACATTTTGAGGGGTGGAAAAATCTTGCTGCCACATGAGCTGCAACTTTTATTAGGTGAGAGGTACTCCTGGTACTGGAGGAATTTTAAAATGCAGGAAACACCTCGACACTTCAAATCTACATTTATTGAGAATGGCGTTAAAGTCAGTGATGACTGCTAAACATCAACTTCTTCACAGACcagtaatttaattaaaagagGCTTCCTAATTGACAAAAACTGAACGTTGCAGTAGAGCTACAGATAAATGACCTTCACCacagctctttttttccttaatcTGACCTACCATGAACTCCCTTTCTCCATGACCATGACTCCAACcagaaagaaaaggagggagAACAGAGAAATAGAGTGAGAGATGGGACACAATTAACAGAGATCCCGGAGGGTATGGCTTTCTTCaggttacatacagtatattacaggGATGGGCAATGAGGACTTCACTTACAGTAAGACAAGCCCCTTCCAGTACACCAGAAACTCCTCAGTGAGCAGCTCAGCGCGCCGCTGTTGCTCAGTCCTGCAACATAATCCGTCCACATGAGCCTGCCTCTGCCTTCCTGTTTCATGCCTCCGTCTTAGTCCAGGTTAAATGACTCACTGATAAAACGGCACCTAGAAAAGCCCCTAAAGCAAAGCTGATCCATTCAAACAAGCATAAGAccttttgaccaaaaaaaaaaaaaaaaaaaaattaattcccCTCTAACAGATGAAGAGTAAGCAATCGTCTGCATGAGGCTGTTATAATGCTCAGACAAGGACTCATCTTCCTCTATTAAATTGCAATTAATGTCAAACAAGAAGCTTTGTGAATCCTGGAGCGTCAATAAAGGAGTAAAAGGTAATCTCTAGGTGTTTGCAATAAATACTGGTTTAGTCAGGCAtgatttgagagagagagagagagagagagagagaattaaggAAACTGACCATCCTCATGAAAGACAAAGAGTTCTTCTGACTTGGGAGATCACCATTATGCTTTTCTACTCCGCAAAAACCAGGAAGAAGTAGTGCCTCGAGTGAGTATGTGTCAATTAAAAGGAATGATAACCTACACTTGGTTCACAGCATTGCCctgatgtatttattaatggACGCAGTCAGAAATGAACGAGGGGTTAGCTTGATGTCATTccattgtgattttttttaagggaaTAAATTTTAGAACCCCAATTTCTTAAGATTCACAGATCAACCGCGTTAAAGGAAGAAGCAACTGGAATTCAGTCTATCTGTCAGATATTAGGTGATGAGGGACTGTGTTCGTGACTGTGACTTGTCTCTGGTTGTGATTAGGTGCTGAAGGGATTAAGATGGCTGCGAGCCGAGCAGTCTTTCGATGGCGGCGTTGATGTCTCCCCCCGTGGCGATGAGCGCCTGCAGGTTGGCCTCTCTGTTGATGAAGCCCATCGCGCTCAGCTGCTCCAGCTGCTGCTGGAAACGCACCTCTGGAGTCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385591 lncRNA downstream 13654 2334452 ~ 2334651 (-) True G325356
TU385586 lncRNA downstream 14548 2315132 ~ 2333757 (-) True G325351
TU385539 lncRNA downstream 92927 2252148 ~ 2255378 (-) True G325311
TU385540 lncRNA downstream 110229 2215483 ~ 2238076 (-) True LOC113533076
XR_003403392.2 lncRNA downstream 110542 2215470 ~ 2237763 (-) False LOC113533076
TU385602 lncRNA upstream 14507 2387309 ~ 2387558 (-) True G325366
TU385609 lncRNA upstream 27515 2400317 ~ 2400590 (-) True G325373
TU385878 lncRNA upstream 224477 2597279 ~ 2598579 (-) True G325616
TU386067 lncRNA upstream 802958 3175760 ~ 3240764 (-) True G325774
TU386072 lncRNA upstream 822041 3194843 ~ 3214451 (-) True G325778
XM_034298047.1 mRNA downstream 8322 2335473 ~ 2339983 (-) True si:dkey-152b24.7
XM_026924442.2 mRNA downstream 8361 2335473 ~ 2339944 (-) False si:dkey-152b24.7
XM_026924441.2 mRNA downstream 10332 2335473 ~ 2337973 (-) False si:dkey-152b24.7
XM_034298048.1 mRNA downstream 10562 2335473 ~ 2337743 (-) False si:dkey-152b24.7
XM_026924301.1 mRNA downstream 76259 2268010 ~ 2272046 (-) True tmem176l.1
XM_026923950.2 mRNA upstream 4676 2377478 ~ 2384403 (-) True mex3a
XM_026924671.2 mRNA upstream 32868 2405670 ~ 2409342 (-) True LOC113532929
XM_026924684.2 mRNA upstream 38999 2411801 ~ 2416406 (-) True zmp:0000000881
XM_026924627.2 mRNA upstream 196189 2568991 ~ 2581023 (-) True mios
XM_026924626.2 mRNA upstream 196189 2568991 ~ 2579474 (-) False mios
TU385328 other downstream 250870 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 897589 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 977276 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 1246188 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 1620671 726627 ~ 727634 (-) True G324579
TU386070 other upstream 864899 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 2590815 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 2590815 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 3456672 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 3503294 5876096 ~ 5978268 (-) False zfpm2a

Expression Profile