RNA id: TU386009


Basic Information

Item Value
RNA id TU386009
length 4739
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G325730
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3139312 ~ 3208962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTAAATTCATTCCTAAATTAAATTCACTCATAAATTCacttataaattaaatatattaaattcagcctttttttttttcaaataaataatctccaaccattttttttttaaacaaatcgaCAGTTGGAAGAGGGAATAGTTCGCAGCAAGACGCACAGCCGAAAACAGACCTATAaactgagctgttactgtagagaaagacacgcccacagtgggcGGGGGGTGGGACGTATAgattctagagagcatttaattggacgaacacaagactagtacaggatgagtcataaaaaaaaatgtaattgttgtcCAGGAAGTgatgaactataaaattaaaataagaatatctccaaattaataataataataataataataataataataataataataataataataaacaccccCGCTTTGAGGACAGCAATTTTAACTCACATGCTAATGGGTAAGATTTGATACGTGTctatctgaatttaaaaaaaaatgtttatattctcCTCCCAATTAATGTTTGCAAATCATAATCAAggtaaaatatttacaacaaCCGTTCATCACAGGCCTGTAATTTAAGCCACACTTTAGATGCATGAAAGGCGCCAAATCAAACTATTCCAAGCCCGAGACGTCTCATTTATTTAAGCTATTTTGCTTCAGACCGATGTGAGTCAGTTACTATTTCTGTCATTATTTCCTCCACTCCACTCCCTCATCAAGGGCCCTCCAGCAGCCGAAGCGCCTTGTGCTTCCTACCCATAATCACCCACTAAGGCAGGGGTGGAGAGAGCATTGATCTGTAAGCAGTCTGTTATCTTTTCGAGTATCACCGTCTCATTAAATCCTCCGTGATGTCTCGGCGTGTGATTACAGCGGCTGTCGGGGCGAAAGTGGCCAAATCTGCTATTAGACGAGTGAAACAGCTGCCTGCGAAATCACGTCTTACGTTACGACCCGAGACGGCTCCAGGCGGCCGTTAGCATAATTACACACTCAGGTaaaccaacacacactgctgagcaAGAAAGAGAACGCTTCAGATTCATTCAGAAGATGATTTTACCCAAAACGGCTgcttttacatattattttattgtcttgCATCACTTAGTCTGTTGGTTCATCTTTAATTTCAGCCCTCTAATGATTTTAGCAAGTTTACTTTcacatttctttttcctctgaTTTCTCTCAGGGTTTTAAACTCAGAACCTTTGCTTCGCTCAGAGGATTGTGGGAAAATGCAGGAAGGCATCCAAACGTAACGCTCTACAATTCACTCATTTGGAAGCATTTTCCAAAAGTGATGCCTGCAGAATCAAAATTCAGAAAACGTTCCAAGTTCATTAGCAGCCATTGCCTAAAGGGAGCAGTTATACAAATGCGGCTGTGCTGCGTAGCGCTAATTATGCAGGTGCTAAACCTTTACCATAATTACCTTTCGCTTCAGGTCTAAGGATAAGCGTTTATCTTTCACAATACGTGACCATTATGACCACACACAACATGTACAGGTATTTGCTGAGAAAACGCTTGCTCCCATTCAGTGAATGTAATAATGCCACccaatatttctgagattttaTGCTTCATCatcgacaaaaaaaaaaaataaagtaaaacaattCATACAACCAACCAACTGGCTATTAGCGTAACAATGGGGTTGGTGAGATATAGAAAACTTTCAAAAAACATGCTGCAATATTGTTAACAGAAGTGACATGAATTTAGACTTGGTATTGGATGTTGTTCTTGTGTTTTGACTAGCATACAGTCAGctccacaattattggcacccttgatataaaaaaaagatatgaaaaaataacTTTATGCTTAACCTTTTCATTGTAGTAAATTAATTCaaaggatatttttttttaaacagaaccATGTGTGTCAATTATTGGCACCGCTAGAAATCCTTAGGAAAACCATGTACCTGAAGCAtcccatttatattttacatcttTTAAATTTCATCTTTGGCCAAATTATCCAATTCtgtctgtaatttaaaaaatctaaacaaaaaatgtacataataaatatataaaatcaaatgaaaatataatttaaaaatctatataaaaatatatgtattattaaagtacataaaatatataagttTTATTAATCCTACCCCTACATCCTACATCGTATCATAAATACTGGTTGTTCACTCAACTGTGTAACTCGTCCACCAATTTAGCAGCTAATTTAACGAGTCTTGTTAAAAGAGAAACTAATTGTAGCTCCCGAGTGGTGCAACCCTATTGTCTGGGATCGTGAGTTTAGATTatgacgatgccacagccgtcCGTGGCCAGAAGACCGAGAGCTCTAGCACTTCTCTAGCACAGGTAAAGGGCATACACTATGGTCACATGATCTACTAATGATTAAGACCTACAGcagtttgcattaaaatgaGACGTACGTAGTATACATGGAACCTTTAGCATGACGACCATGTGTACATCGTGAAGACCATGccaataatattaaacattaaacaactATTATCCCACCTGAATCATAGAAAAACTCAAGAACACTATCTATCTACGTGTCTTGTTAGAACAGATTTATAGCTGTTGCAAATTGCCTGATGTCTTCCTATTAAACATGATTTAGTTATAAATTCTGGGATCTGAGACACTGTTACAGACTCCATCAGAGTCATGAGCGTGTTTGAATTTTCCCAGCACCATCTCATTTCATGTTTCATAGTCACTTACTTAATTTTCCAAAATAGTCCTGCCTTTGGGGGATGCACTATGAGAAATGATGGAGAAGATCTGAGGCATCCATGAATAAGACATGAAATTTTCAAGTAAAGGAGGGGGGGGAAAACATGACTCAAATACAGCCATCAATTATTCACCAGAGTAGCCATCAGCATGAGGGTTCACATGAACGCTTGCGTACGACGTCTTCGCCGTGCGTCCGTGTAGGGGGCGGGGGGGATGGCCTATGGCTAGTAAGGAAATGAGAAGAGAATAAGCTGCCGCCTGCACTAAAAAAATGTGCCATGCATTTTTTATTGTCAAGGGACAATTACGCAAAATCCTGTCATGGCAAAAATCATTCACTCGGTTCTTGAATGCTGACTGGATGCACTGTATTAATGTTTCAGAGCGTCAGCATGAGCCAGATTTGCCTCTGGTTGGTGCGTTCAGTTCAAAACCCAAGGTCAGGACGGTAACCTTTGTAAAAATCTCATTAGCAAGAAAACTGATTAGCAACAAGAATCATCTACAGTCCCTAGAAACAAAAACGGTTAAATCagttaaacaaaaacagttaCATCTAGGACCCCTTATGCATTTGTTCCTTTGCGGGAACCATTAAAATTTTCTAACAGTGGGTTTGTGGAGAAATTTAAACCCTCAGGGGTCTTTTGGTTGTCCCTCAAGACCCAATGCCTCAGGGTGCAGATAAAGTAGAAACCTTTCATGAGGAATCTTTGTACAACCCTTACTTCTAAGATCCTAtgcccttaagggttctttgcttGTCCCTCTGGAGGATAGGCTTATATGTAGAATCCCTACCAGATAGGGTTcccaataaaacatttttaagagTCTAGAAAACTAGGATTCATCAAAGAACTAGCATACATGATAGTCATTTCTTTCCAAATGTACTGCTAGAACATTTAACCACCAAGGAACCCTTGTCAAACCCTTGTTTCCAGGAGTGAATGCCTAGGCTTCAAAAATTTAAACCCTTAAAGGCTTTTTGGTTATCCCTCTAGATGACAAGATTCTACGTAGAACCTACAAAAGTGGGTTTCGGGGAATACTAGACCTCTACCCAGCCAAAGAACTCCTTTTGTTCTAACAGCGTAGGTGGTGTTTTTACCTGAACTGCAGCAATTTTCTAGAATCTCCTAACAAGACCTCTCGAGAgacattcattttcaatttatGCTAGAACCTTTTAACCATCTGAGGGACTCTTGCCAAAACACTGTTTCCAAAAATTCATGCttatttttagaagaaaaaaatttaacccTTTAGacttctttggttgtccctctggaggGCAAATTTCTATGAAGAATCATGAACATtctttaattatccaatgaaacCTTAAAAACCTAATTTATGTAGACTTCGTTAATTACTAGTCAGCacgctagctagctactaaTTAGGCTAAATCAGCTTAaagtgacaaattaaattagtctgaaatgaaatgtttaggATTTATTAATGTTACTTTTTAGAAAAAGAGACAAGAAATGCTTTTATTCAGGACACAACCTTATTTTCCCTCAAGATCTGAAACGTTAATGAGCCACATTAGAGTTCTTACCACACTGCCATGATTGAGATGCAATGAATTTCAGCGTGAAAGACGTTGAAACATCTCGGCAGACTAATGTGTTGCTGAATGACTAATTCAGACTAATTATAATACACACAGCATGTGTGCATGAAGCCACATGGCGGCAGGGGAgggaaaaaatcatttaaaagctTTCTCAGAAAAGCACAAGCACATGGAAGAGCTTAGTCACTGAAAGACTCGACGTGCTGTTGCGAACATTTCAAAAGTCACTCAGAGGTTAAAGTTAAAACCTGACACTAGGAGACGACCAAAACAAGAACATTTCACCAGCACCACAAAACTCCAAATTTTGTAAATCTAACCGgaatacattatacacacctGTCCTTATCCACAATAATGAACAACTACAAGCCGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385973 lncRNA upstream 67239 3071849 ~ 3072073 (+) True G325697
TU385717 lncRNA upstream 491729 2644041 ~ 2647583 (+) True G325462
TU385672 lncRNA upstream 569573 2567979 ~ 2569739 (+) True G325435
TU385486 lncRNA upstream 738628 2400470 ~ 2400684 (+) True G325271
TU385483 lncRNA upstream 742425 2396673 ~ 2396887 (+) True G325268
TU386041 lncRNA downstream 49967 3258929 ~ 3260181 (+) True G325754
TU386119 lncRNA downstream 110955 3319917 ~ 3322330 (+) True G325815
TU386344 lncRNA downstream 492372 3701334 ~ 3702153 (+) True G326023
TU386457 lncRNA downstream 671715 3880677 ~ 3880941 (+) True G326131
TU386508 lncRNA downstream 736420 3945382 ~ 3946133 (+) True G326178
XM_034297894.1 mRNA upstream 482398 2646781 ~ 2656914 (+) True slc25a32b
XM_034297895.1 mRNA upstream 484936 2648485 ~ 2654376 (+) False slc25a32b
XM_026924423.2 mRNA upstream 532276 2583219 ~ 2607036 (+) True col28a1b
XM_026924042.2 mRNA upstream 576231 2554120 ~ 2563081 (+) True ica1
XM_026924446.2 mRNA downstream 31480 3240442 ~ 3251360 (+) False pbx2
XM_026924447.2 mRNA downstream 31480 3240442 ~ 3251360 (+) False pbx2
XM_026924444.2 mRNA downstream 31482 3240444 ~ 3251360 (+) True pbx2
XM_034298007.1 mRNA downstream 31482 3240444 ~ 3251360 (+) False pbx2
XM_026924445.2 mRNA downstream 31483 3240445 ~ 3251360 (+) False pbx2
TU385671 other upstream 569573 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 925013 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 925051 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 994801 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 1975698 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 802448 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 1712018 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 1715824 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 2123306 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 4692830 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile