RNA id: XM_026923936.2


Basic Information

Item Value
RNA id XM_026923936.2
length 2015
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC113532533
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3230021 ~ 3251447 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTTGGGGTAGagaaaggaagaggaagaaagtcAGAAAAAAGCAGCCTGAATATGAAACTCAGAGCTTGCCAGTACATCGCTCAGCTATCTAATTAGATTCTTTTTCGGAAGGAAAACTTGGCAGGTGTGAATTTAATATGAAGTGTCTATTTTCATTTAGTGGCAAGAGACGAAGCCAATGAGGGCTGCCCACGAGATACAGTCTAGAGGAGGTTATTTCAACATTTCACGATCTGGAAGACGGGTTCCCATATCCGCTGGATGAGTGAAGGACATACCAGAGGATTCTGACATGGACTGTGcggaggtcaaaggtcatatCCCAGCGGAGGAGCAGCTGGAGCCACTGGTCATCCTCGAGGAAGGGGACAAGCTGGACGATTTCACACATATCTCTACGACAGGGAAAGGCATACTGAGAGTGAAGAAGGAAGACATGGAAGACAGAGTTAAGGGAAGCTCGAATGGAAGTACAGATTCAAAAAATGATGTGGAAGAAGGTGAAAGCATGCACATAACTATCACTCAGGAGGAAGTGGAAAGTCAGAGAAAGGAAGGGTTGGGATACGAAAACCGAAAGATCGAGGGAGTGACGGAAACCGAGGAGAACACCGAAGTGAAAAGAGTCCAAACCGTACCTGGATTAGTGATGGAGAAGGCGGGAGGGGAGATGGAGGGAATGCAGACAGACACAGTGTCTAAAAAAGAGTCACTTGCTGATACCCAGCCTTCAGCCAAACTACGACCCAGAGACCGACTCAGTCCTGAAGATGCTCAGCAAAAGGTCCACAGGTTATCCCCGGATTCTCCTGACGCTCTCTACGAGCTGCTCTGCGCCTTGCAGGAGGGCCGTCGGCTCAACGACCAGCGCTGCTCCTTCACACTGCAGCCACGCCGGAGGTGCCACTCGGAGCCTGGAACCCCACGCCACAGCCAGAAAGTGGTCTTCTCATCCATGACATCGCTGCAGAAGGAGGAGTTCTTCGATCTGGTGGCCACCTCACAGGCTCGACGGCTGGACGACCAGCGTGCTGATTTTCAGAGCACTTCCCCAGTAGCTCCTGTGCCTGTGCCTCAGGAGCCTCGGCGTCCCTCCAGCGCCCCTGGATCTTTCTCGCAGCCCAGACCCAAATCCAGGAGAAGCAGCTGGAAGGTCATGGAGTTCGGCCAGACCGTTCCCAAACCGGCGGCGAAGGAGGAGCTCTACAATATGATCCTAACCTCACAAGCACAGGGCCGTTTGGAGGAGCAGCGAAGCAAAGCACCAGGCCCTATGGATGATGAAGATTTCTTCTCCCTGCTGTTGAAGGTCCAGGGAGGCCGTATGGATGAGCAGAGAACAGAGCTTCCTGTAGCACTTCGGTATTAAAAGAGACGCTGGCTAACACTGATGAATATTGAAAAAGGGCGTTATTTCGGTTACATCTGAAATGTCTTTTAGttacttttttaactttttagcTTTTTGTCtaaaatgatgtaatttatgATTGTCTGAGCCTCAAGtaggtttttttaaattgttgggGTTCCTTTTAAATTGTtgagattcattttttttttagtgttaatcATAGAACGTTTTTTTATAAGAAAAGCTAGGGTCAACACTTGAGCTGAGATAAATGTTGCACATGGTTGCAACAGCTATTTAATATTTGCTGATGTTTTTCAACGTTGGTGTTTGCTTCAGGGAGGCGTGAAAGAGAGATTAGAGGAACAGAGAGTGCAGACTTTTAGAAGTGTGTATGGTGTAAAGCAGTGAAAGACCAAGAGCTGAAAAACAATGGGTATATAAGAAGTAAGGCAAGACACTGTAAGTGAATggggtaataaaaaaaaaaaaaaaaaaaaagatatcacaatcaaTATTTTTAGTAAGGTTTGAAATAGGAAGAGGCATGAACATGTACATTTAGGTCAGCATGTGAATTTAGGTCACCTAGAAACTGattatgagaagaaaaaaaaacaaactattgTGGTGTTAATGTGTTGCAACCTGAGTTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386072 lncRNA downstream 17983 3194843 ~ 3214451 (-) True G325778
TU386073 lncRNA downstream 31184 3199227 ~ 3201250 (-) True G325779
TU385878 lncRNA downstream 633855 2597279 ~ 2598579 (-) True G325616
TU385609 lncRNA downstream 831844 2400317 ~ 2400590 (-) True G325373
TU385602 lncRNA downstream 844876 2387309 ~ 2387558 (-) True G325366
TU386121 lncRNA upstream 80903 3319815 ~ 3320248 (-) False LOC113532799
TU386120 lncRNA upstream 81003 3319915 ~ 3322362 (-) False LOC113532799
TU386393 lncRNA upstream 481777 3720689 ~ 3796359 (-) False znf385d
TU386460 lncRNA upstream 582993 3821905 ~ 3878517 (-) True G326133
XR_004576980.1 lncRNA upstream 635011 3873923 ~ 3881884 (-) False LOC113532993
XM_026924253.2 mRNA downstream 18807 3159472 ~ 3213627 (-) False ext1a
XM_026924252.2 mRNA downstream 18807 3159472 ~ 3213627 (-) True ext1a
XM_026924865.2 mRNA downstream 81683 3141067 ~ 3150751 (-) True rad21a
XM_026923962.2 mRNA downstream 92335 3111442 ~ 3140099 (-) True eif3ha
XM_034297833.1 mRNA downstream 186547 3036394 ~ 3045887 (-) True LOC117595760
XM_026924864.2 mRNA upstream 13781 3252693 ~ 3262914 (-) True notchl
XM_026924438.2 mRNA upstream 80632 3319544 ~ 3404418 (-) False LOC113532799
XM_026924437.2 mRNA upstream 80632 3319544 ~ 3404418 (-) True LOC113532799
XM_034298123.1 mRNA upstream 377683 3616595 ~ 3672133 (-) False LOC113532763
XM_034298124.1 mRNA upstream 377683 3616595 ~ 3670287 (-) False LOC113532763
TU385328 other downstream 1134999 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 1781718 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 1861405 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 2130317 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 2504800 726627 ~ 727634 (-) True G324579
TU387191 other upstream 1724705 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 1724705 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 2590562 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 2637184 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 3190948 6429860 ~ 6429932 (-) True trnam-cau_47

Expression Profile