RNA id: TU386073


Basic Information

Item Value
RNA id TU386073
length 1974
lncRNA type intronic
GC content 0.38
exon number 2
gene id G325779
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3199227 ~ 3201250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAATTTAGTAGacttttgttaaaaattttataaaattacatttttatgatgtttgtttaatgttaCTTCTTATGTATAAGTATTTATGGAACTTCTACAGGGGATCAATAAGTGTACGTCTTAAAATATTTCGAGCGTTCCTTTACTGTCATGTCAGCACTGAGAGGCATCAAGACGGTCTTTGAATTCTCTATGTAGCAAAATCAGTGCACTAATAAAGAAGTAATTAGGAATGTTTAAGTAGAGAGAACAAAGCATGTGACTCTGTCTCTTtccacattattcatttttgaCATACTAACAGTTACTGCTATTACATTTTAGGGCACTAGATAAATGCCATTGGAAGataatttgaatgaaatatgaCCAAACCGCTGCTAAAATTGAGGTCGTTGTTGCAACCTGAAGCTGTGAAGGTTGATACCATCCCTTTACTGATGCTTTCAAACCCAGAACTTTGCTTTCTGCACTCCAACCTGAGACTCGAGTGTATATTATGTACATTTCTGCCTAGTTGATGCCCGTCATCTGCTTTCTCATCCACCCACAGTCCTCCATCTCCGTGTGCATCTGCGGCTCTAAGCCAGGCAGCAGGGTTTAAAACTGCtctataaatacaaaaatataaatcccCGAAGGGCGGCATGACGTCAGCCCGTCTCCGTGTCACACGGACCGCACACATTTTTCTCCTCTGTGCTTTGGCAGCGATTCCTAATTAGAAACGTGGTAGAAGCTTTTGGTTTATGGCTGCCATTTGATCCCCAGCCTTTTTCTCCCTTCGCTGGCTGCATGGGAAGGGACTTGGGTTTGAAAGGATGACTGGGGGAGTTAATTTGGTGTAGCAGGcgtaacatttttttatagcCTGTCTTTGTTGGTTCTTTGGTTAACACCATGTAgactttaattaaagaaaaaaaaattgaagataAATGATGTTTAGTCTTGTacgatgttttttttcccctctgattAACCATAAAAACCTTCGGTTAATGATTTAGGCTAATCATCCAGAACAGATAAAAAATGAcgcacaaaaaataaaactgtttctgTAGGGCGACTCACCCTGTCACGgagaggaatttatttattttttttaaggtaaTTCCGATGGTTTGAGTGGTCAAACCTTTTCATTGGATTTGAATCCAAAGAACTGCTAGATTAGAGCATGACAAGTTTTCTTTTTGCATAAGATTCTGCTAAGTTCTAAAAGCCACATCCCTAAAATCgttatatcgcacaagcctaatCTTGATTATGAATCAACATGAACATTGCATCATCTAAAGAATTTGAATACTTTAGTTCATACGTAATGACTATAatgacagaagaagaaaaaaaatcgaaTATAGTTCGAGCCGGGATGGATGTGGACGGAAATGCCAGTACGGAAAGCGGAAGCCTTTTCATCTGGTTTGATCTCGGTTTACAGTCTcgcttgtgtttattttagattGCACTAACTGGACTTTGCCTTTGGTTTGTGGTTGCGAAAGGTAGCATTACTCAACACGTGTAATGATAGGCTTTCCAGATGTTTCCCAATAAAACTTTTCCATCTACACTTTAGATGCCTGGACTTTCCCTCTGTTGTTGTCATGAAACTCAGCATCATGCTGTTTTTTGGAACATTGAAGTAATGACTAGATTATTCTTGCTTGTACGCAGTTTCTAAAGattttataacaaaatattactgttttattgATTCGAGCAGGCTATGGATGGTGCTAAATATCTAAATCAGTGTAGCTCCATGGTGCTGATAACAgccttcatttgtttttttcttctttcttttttggatGTGGGGACTGTCCAGGGTGGATTTGTTAAACTGTAATCTTTATTTACCCAGGAATCTGTCAGGATATCATCTAGAAAATGGACACTGGTCAGTAATCCTGATggcaggatttttttaatgcttgaaAAACATGGTTCTGCAGCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385878 lncRNA downstream 600648 2597279 ~ 2598579 (-) True G325616
TU385609 lncRNA downstream 798637 2400317 ~ 2400590 (-) True G325373
TU385602 lncRNA downstream 811669 2387309 ~ 2387558 (-) True G325366
TU385578 lncRNA downstream 826425 2348305 ~ 2372802 (-) True G325343
TU385576 lncRNA downstream 849645 2348305 ~ 2349582 (-) False G325343
TU386074 lncRNA upstream 7956 3209206 ~ 3237328 (-) True G325780
TU386063 lncRNA upstream 28771 3230021 ~ 3251447 (-) True LOC113532533
TU386121 lncRNA upstream 118565 3319815 ~ 3320248 (-) False LOC113532799
TU386120 lncRNA upstream 118665 3319915 ~ 3322362 (-) False LOC113532799
TU386393 lncRNA upstream 519439 3720689 ~ 3796359 (-) False znf385d
XM_026924865.2 mRNA downstream 48476 3141067 ~ 3150751 (-) True rad21a
XM_026923962.2 mRNA downstream 59128 3111442 ~ 3140099 (-) True eif3ha
XM_034297833.1 mRNA downstream 153340 3036394 ~ 3045887 (-) True LOC117595760
XM_026924403.2 mRNA downstream 280333 2680337 ~ 2918894 (-) True csmd3a
XM_026924873.2 mRNA downstream 531018 2656902 ~ 2668209 (-) True cthrc1b
XM_026923934.2 mRNA upstream 31184 3232434 ~ 3239151 (-) False LOC113532533
XM_026923936.2 mRNA upstream 31184 3232434 ~ 3238912 (-) False LOC113532533
XM_026923933.2 mRNA upstream 31184 3232434 ~ 3238911 (-) False LOC113532533
XM_026923935.2 mRNA upstream 31184 3232434 ~ 3238857 (-) False LOC113532533
XM_026924864.2 mRNA upstream 51443 3252693 ~ 3262914 (-) True notchl
TU385328 other downstream 1101792 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 1748511 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 1828198 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 2097110 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 2471593 726627 ~ 727634 (-) True G324579
TU386070 other upstream 36451 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 1762367 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 1762367 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 2628224 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 2674846 5876096 ~ 5978268 (-) False zfpm2a

Expression Profile