RNA id: XM_034297810.1


Basic Information

Item Value
RNA id XM_034297810.1
length 1847
RNA type mRNA
GC content 0.53
exon number 8
gene id znf385d
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3720689 ~ 3796368 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagaaagagagactggaAGAGAAAAAGTGGAGTTTGGACGAGAGGTGcactctccacacacactcacacacacacacacacacacaccaggaacCCTgggacgagagagagagagaaagagagagagaaagattgacGGAGGAGGGACAAGACAGCGTTGTGGCAGCGCGTGCGGCGGTTAAACCACACACGCGCTCTGTCTCTCCTACAGAgcactgtctccctctctcacacacacactctctctgacacacacacacacacacacacacacacacacacgctcgcgCGCGCTGAGAACATGGAGCGTCCGTCGGCGTCTCCAGCACGCGACCAAGCCGGAGAGCTGCGCGCCTAACGGATTATGGAGAGCAGTATGTTTCTGGTGTGTGTCAGGGTGGCTTGGTGCCGGCTCTGGTTCGAGCTCCTCTCCCCCAGGTTCACTCGTCTGTGGGCCTGAAGCACTTCCTTCCCTTCTCACTGGAGGCGAGCCCCGCCCTCAGCCTGCTGCCCACATTCAGCtctATGGACCCGGTTCAGAAAGCAGTCCTACATCACACATTTGGCATCTCTCCTTTGTCTAAAAGGAAACACGTCTCCTGCAACGTGTGCCAACTGCGATTTAATTCACAGAGCCAAGCGCTGTCCCACTACAAAGGCACCAAGCACGCCAAGAAGCTTAAATCTCTGGAAGTGCCCAAGTGCAAGCAGAAAAGCTCTGCGGTAATGAGGGAAAACAGGAAGGAGCCTGAGAAGAACCTCTCACTTTCCTCTCCACCAAGCATCACTGAGAGGAAAGAAGCAATTCCTGATCCATTATACCCGGCAATTCCTCCATCTCCAGCCAAGTGCAGCTCCAGTGTGGCCTCCTCCGAGGTCGAGTTTACCTCAACAGAAGGACAGAGTCCAGACGTCACTCCTGGAGCAGCCGAGGACCCCGAAGCCGAGAAGGAGACGGAGGAGGAGAAAGCTTTGCGTCTTCTTTACTGCTCGCTTTGCAAAGTCGCTGTCAACTCAGCATCCCAGCTCGAAGCTCACAATAGCGGCACCAAGCACAAGACCATGTTGGAAGCGCGGAATGGTAACGGCTCCATCAAGTCCTTCCCCAGGCCAGGGGTGAAGAACAAGCTACTGTCACCTAGTGCTGCATCGACGGGCCTGCAGAACAAGACATTCCACTGTGAAACATGTGACGTGCATGTCAACTCAGAGACACAGCTCAAGCAGCACATCAGCAGTCGGCGCCATAAAGACAGAGCAGCCGGAAAACCAGCCAAGCCCAAGTACAGCCCCTACACCAAGACCCCAAAAGGACAGACCAAACAGCAAATAGGAAATACACCAGTGAAGCTGCCTCTGAGTAAGGACGTGGGCCAGCCGCTGACCGCCGCAATAGTGCCCTCTCACTTGGCAGCCGTTGCCGCAGCAGCCGCCGCCTTCCCACTTCGCGCCAGCCATAACCCATCCCTTTTCCAGACTCAATCTCTCCCCACAACACTTCTTCGCCCTGCACCTGGGCCCATTAGGACCAGCCATGCGCCGGTACTATTTGCTCCCTACTGACCTCCGAACTGTGACTTCGGATTAAGTCTGACACACCATCTCAGCGCTAATTTAATTGTGGTCCAGTCGTGTGGattattgccttttttttgtccatCATCACACAAGAATCCTGTATGGATCTGATGTGTGAAACTATACCGcaataattaaaaagacaaaccaGGTAACTATGCATTGTCATCTCCATATGACACACTGACTCTAAGCTATAAATGGATTTAGGGATATATTGTTGGGAGGAGGTTTGGTCTTGGTCATGTCATTgcttttggaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386120 lncRNA downstream 409868 3319915 ~ 3322362 (-) False LOC113532799
TU386121 lncRNA downstream 411982 3319815 ~ 3320248 (-) False LOC113532799
TU386063 lncRNA downstream 480783 3230021 ~ 3251447 (-) True LOC113532533
TU386074 lncRNA downstream 494902 3209206 ~ 3237328 (-) True G325780
TU386073 lncRNA downstream 530980 3199227 ~ 3201250 (-) True G325779
TU386460 lncRNA upstream 25537 3821905 ~ 3878517 (-) True G326133
XR_004576980.1 lncRNA upstream 77555 3873923 ~ 3881884 (-) False LOC113532993
XR_003403379.2 lncRNA upstream 77555 3873923 ~ 3881845 (-) True LOC113532993
TU386553 lncRNA upstream 161135 3957503 ~ 3958995 (-) False vsig10l
TU386580 lncRNA upstream 202741 3999109 ~ 4001515 (-) True G326235
XM_034297947.1 mRNA downstream 19712 3701334 ~ 3712518 (-) True efhb
XM_034297948.1 mRNA downstream 19712 3702296 ~ 3712518 (-) False efhb
XM_034298127.1 mRNA downstream 69066 3616595 ~ 3663164 (-) False LOC113532763
XM_034298264.1 mRNA upstream 96519 3892887 ~ 3915968 (-) True nek10
XM_026924743.2 mRNA upstream 149182 3945550 ~ 3950960 (-) True lim2.5
XM_026924686.2 mRNA upstream 161129 3957497 ~ 3966115 (-) False vsig10l
XM_026924685.2 mRNA upstream 161129 3957497 ~ 3966115 (-) True vsig10l
XM_034298249.1 mRNA upstream 172480 3968848 ~ 3978679 (-) True etfb
TU386070 other downstream 493083 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 1634795 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 2281514 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 2361201 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 2630113 1047583 ~ 1102117 (-) True nek11
TU387191 other upstream 1167249 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 1167249 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 2033106 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 2079728 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 2633492 6429860 ~ 6429932 (-) True trnam-cau_47

Expression Profile