RNA id: TU386524


Basic Information

Item Value
RNA id TU386524
length 1215
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G326193
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3967532 ~ 3973002 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGacagatcatttttattttcacagttaGATACTGTACAATCAAAACTCAAAACCAGAGGCATTTGTGGTAAAAAGAGCTCACTTCTCCCGTTCTGGTCCATGCTGAGAGACATTGTCTTAAGTATAAACGATTCAAGCTGAAACAGTACTCGTGTGATTTATTTACAATTCAGATGAGTTTTtatatggtgtatatgtatttttaaataaagggcATTTCTAATAAAGAGTGTAAGATCACAGATACACAGATCGTTTTAACAGAAATGGAAGCAGGACAAATGAGTTAACGGAAAACAGACGTCAAACTGTATCGTATGCTTAAATCAAGTAGTGTACAAGTGCTAATCTAGGAAGGTTTCCAATGTGAGTACCAAATAAGTTACTGAATACAGCATAAAAGCGAAAACTGTTCCTACATCAGCAGTCAGTCTAAGATAAATATGCATCAGTATCTCTCTGAATTCTGATCATTTAAGATGATATGATCAAATAGGAAGCAAAAACTGACCGTAGATCAGCACTCTTACTCTTAAACGTGAGAAAGTGTCTCTCAGCATTAATCTACACCAAACAGTGTAGCAAATCTAGGTGTAATACAGCAGAGAGTTTGCTGCATAGACCAGTGTGCAGGTTCTAAGGACCAGGACTAGAAATAGAGATGGAGTCAGGATACAGAGGGGAGCAGATACTGCTACAGCCGGCTGGTCAGAGAATCAGTGAGAGGGTTGAGATGCTGCAAGAACGTCCATGGAGTTTGATTCAGGGtttaaggtgaccaaaaaaaaaaaaaaaaacagagttcgTCGGTGTGTTTACCGTCGCTGTGCAGGAAATCGCTTAAcattacagtttgacttggaaaccagacggacagagatgttttggctctctctgacgtgccatctagtggcATGGTGACAGTGAAGTATATTTACACCTTTAGAGAACTAGAAAGCTGTAATGTGAAGCCACTGGTGCTTCCTCTACACTCTCAGCATCCTGTGAGCTCCATTTTCTGGAAATTCTCAAATTTTCTCAAAACGCTACCTGTTTCCCGAGGATGATGAGGGAAGCCTCCTCTTTCTTGGCCAAAGCGGCGAGGATCTTGGACACCTGCAGAGGGCCGAGAGACTCGTAGTCCTTTCCGGAAACTTCCACGTGAATGCCGCGGTCTGCCCCCATAGCCAGCGCTGTGCGGATGgtctcctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386508 lncRNA upstream 21399 3945382 ~ 3946133 (+) True G326178
TU386457 lncRNA upstream 86591 3880677 ~ 3880941 (+) True G326131
TU386344 lncRNA upstream 265379 3701334 ~ 3702153 (+) True G326023
TU386119 lncRNA upstream 645202 3319917 ~ 3322330 (+) True G325815
TU386041 lncRNA upstream 707351 3258929 ~ 3260181 (+) True G325754
TU386648 lncRNA downstream 346213 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA downstream 375779 4348781 ~ 4351847 (+) True G326281
TU386679 lncRNA downstream 418582 4391584 ~ 4394784 (+) False hmgn2
TU386681 lncRNA downstream 425676 4398678 ~ 4406561 (+) False LOC113532991
XR_004576935.1 lncRNA downstream 493506 4466508 ~ 4468850 (+) True LOC117595758
XM_026924031.2 mRNA upstream 22302 3940385 ~ 3945230 (+) True LOC113532597
XM_026924032.2 mRNA upstream 27505 3935562 ~ 3940027 (+) True LOC113532598
XM_034298268.1 mRNA upstream 32356 3917417 ~ 3935176 (+) False LOC113532591
XM_026924054.2 mRNA downstream 7426 3980428 ~ 4002436 (+) False LOC113532613
XM_026924053.2 mRNA downstream 7428 3980430 ~ 4002436 (+) True LOC113532613
XM_026924670.2 mRNA downstream 38378 4011380 ~ 4013531 (+) True hamp
XM_026924409.2 mRNA downstream 97054 4070056 ~ 4206519 (+) True iglon5
XM_034297819.1 mRNA downstream 310286 4283288 ~ 4288230 (+) False LOC113532664
TU385671 other upstream 1397793 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 1753233 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 1753271 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 1823021 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 2803918 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 38408 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 947978 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 951784 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 1359266 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3928790 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile