RNA id: TU386632


Basic Information

Item Value
RNA id TU386632
length 2348
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G326281
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4348781 ~ 4351847 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttccttttaaaaaataacccTCCCCAACACTATTACATACAGAGCCAAAATAACTTTGTTCACATGTACTTCCAAATCAGCCTATTGGGAAGTGCTAAGATAAGGGCCGTTCTTTTGCAGTGGCTTTGTATTGCTTTTACAGTGAGGCTGAGTCAAGTTAGATATCCACTTCCTTCTCTTTGGGTCTAAGGGGCTTTTCCCCCCACTTGAGGCTCCTTTGACTTAAGTGAGTTAAGTACTGCATCATGATATAAAACTGCtggatcagatcagatcagatcagagctCTCTCAATTCTATAGGCCCAACCATCAGAGGCCATATCAATGTGTCACGTCCTTCTCGGAGTGTGGAATGTGCAGCGTGAGCAGAGAGTGCTCACGACGGCTGTGAAAAGACCTTGTATTGCTTTGTGTACAGACCAGTTTAGAGATGCTGGAAGGCTCTTGTGGAATAGGAAGGAAAGATTTGTGTGTAATCTTGTGTCTCCATTATTTATCTACAGAGTGCCAGAATGCTGCACGGTCAGTTTCCTCACATACAGACAGTCTGTCTGAAACAGATGCACGTTTCCAAAAGATAAGTGCCTCTTTGAATGGTTGGCATCACATTTGGCTGGTTCAGAATGCTGGTTTCCGTGTTGCACACATAGAAGTAACTTATCTTAAATGTATGGAAGTCCATAGAGgccatatgttttttttttctgacttgtAATACTTGTAAGATTTCAACTTTTTCTTATAAGAAGAAACTGAAATAGGGAACTGGCTAGCACCCAGAAATAATACTAGCCAGCTAACGTTTaagaaacattcattcatcttcagtaactgctttatcctagttcagtggatccggagtctatcctgggaacactgggtgtgaggcaagaatacaccctggatgttaCACCAGGCTATCACAGACCAAGGCGCAATTTAGAGTACCCAATCAAcctcctggcatgtttttggaaggtgtgAGGAAACCGAGAACCAGACAGAAACCCatatggacacagggagaacatgtgaacatGTAACCCAGCAcgtccaaaaataaaatgtacgcCAAATATCGCCAAAtgagccaagacatgtttagaagcttgcttctttagttttgcactggccCTACAAGGTTATCACTTCTAACATTTAAAGTTtaagccacacctcctaccTGAGTCTGACTCTTATGCAGACTGACATCAAATTGCATGCTGATCCCGTtcttattgttttgttttgtattttttttttttaactctgtgaTGCCCTTTTGTCCATTTGTGATCTAGacatgcagtttgcacaatgctaaagtGGACAagctttccttattttttttacctacaTTAGCCACAAAGcatcagtgcaaaactaaaaaagcaaacttcagacatcaAACATATTTTGACTACATTTGAGCTCTGGAggaaattgtgtacatttgattTGAGTAGAACTACTCCTTTAACTCTATAGCTACCACTTCAGCCTTATGTCAAGCCTTATCTATGTGGCATGCAGTGGAGCTTAAGCTGCCTATATGATTGAAAAAAGGTAAGGAAGAACAtgggacaggaaaaaaaaaaaaaaaaaaaacatgtatgacCCCTTTGGACTTCCATATAAACGCAGTCTATCTATTGTTATGCTAGTGCTACCCCTGACTACGGAGGCATGTCTAAATAAGATCGGCTACACTCGAGAGCGCTGAGCACAATGATGCGTCTCCAGCATCCACGGCGTGCTACGGTCCGAAGTACAGAGACAAAGACGTAACCGCCTAGCTCACGGTGTCTAAAAGCTAACTCTAAGTGCTAAAATCTTTCATTCAAGGctgttcaaaaataaaaacacaataaaaaagtgttcatagagcaagaattaaaacaacacaaaggTGTCGACGCTTGTTTTCTCCGCTGAACACTGATGCGCGACGAAACGTCGTAGTGGCAGTCGAATCTTCGGGTGGGTTGTGCCTTTGCTTCTCCTCCGTATTGCATACGAACAAACATACACGGTGTGAAGGTAGTAAACaacaatacacttttaaaaaaaacaacaacaaaaaaaaacaaggtaaaCGAGGCTCAGGCCTGCCAGATGAGGGCATGACACTGTGTTAGTTCTGTTGAGGTGCGTGGGATTTGTAGTGTGTACTGGCTCGAGCGCAGGGAGGCGACGAGGCTCTTCGGGCCCCCTCAACATCAGCACAAGGTGAGGCTCTCAGGCGAAGTACATGGTCCTCAGGGTGTCATGGTGAATCTGCACTGCTTTGGCCAGAGCCTGGGGATCCCGGCCGTTACTCTGACCTGAGACGTGGCTTCCCTCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386524 lncRNA upstream 375779 3967532 ~ 3973002 (+) True G326193
TU386508 lncRNA upstream 402648 3945382 ~ 3946133 (+) True G326178
TU386457 lncRNA upstream 467840 3880677 ~ 3880941 (+) True G326131
TU386344 lncRNA upstream 646628 3701334 ~ 3702153 (+) True G326023
TU386119 lncRNA upstream 1026451 3319917 ~ 3322330 (+) True G325815
TU386679 lncRNA downstream 39737 4391584 ~ 4394784 (+) False hmgn2
TU386681 lncRNA downstream 46831 4398678 ~ 4406561 (+) False LOC113532991
XR_004576935.1 lncRNA downstream 114661 4466508 ~ 4468850 (+) True LOC117595758
TU386730 lncRNA downstream 190580 4542427 ~ 4542695 (+) True G326359
TU386740 lncRNA downstream 227703 4579550 ~ 4587322 (+) True G326369
XM_026924919.2 mRNA upstream 45251 4294369 ~ 4303530 (+) False si:dkeyp-97a10.2
XM_026924920.2 mRNA upstream 45252 4294370 ~ 4303529 (+) True si:dkeyp-97a10.2
XM_034297819.1 mRNA upstream 60551 4283288 ~ 4288230 (+) False LOC113532664
XM_034297820.1 mRNA upstream 60551 4283659 ~ 4288230 (+) True LOC113532664
XM_026924156.2 mRNA upstream 60551 4284199 ~ 4288230 (+) False LOC113532664
XM_034298281.1 mRNA downstream 26176 4378023 ~ 4389461 (+) True dhdds
XM_026923895.2 mRNA downstream 39673 4391520 ~ 4394784 (+) True hmgn2
XM_026923894.2 mRNA downstream 39682 4391529 ~ 4394778 (+) False hmgn2
XM_034298293.1 mRNA downstream 46812 4398659 ~ 4434251 (+) False LOC113532991
XM_034298292.1 mRNA downstream 46819 4398666 ~ 4434251 (+) True LOC113532991
TU386582 other upstream 335243 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 1779042 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2134482 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2134520 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2204270 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 569133 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 572939 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 980421 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3549945 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 4036340 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile