RNA id: XM_026923894.2



Basic Information


Item Value
RNA id XM_026923894.2
length 925
RNA type mRNA
GC content 0.38
exon number 6
gene id hmgn2
representative False

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4391520 ~ 4394784 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TGGTTTAAACCGGTTTCCTAtcttaatatttcaatataaaaaactaaataaacatacacagcCGTTATTGTATTTAGCACACTGTAAGGAGAGCACGACGGTGTCCTGCGTCTGAACCCTTACCTCCACaaaaaaacctgatttttttctgatttttttctctgccttttTAAAAACCAGGATGCCTAAAAGAAAGGCTGATGGAGACAAGGCTGCCAAAGCCAAGGAAGAGCCAACCAGGCGCTCTGCAAGACTCTCTGCCAAACCGGCTCCTCCCAAGCCAGCCCCCAAGCCTAAGAAAGCTGCCCCCAAGCAGAAAGCAGCCAAAGGAAAGAAGGGCGCGAATCCTGCTGAGAATGGAGATGCCAAGGCAGAGCAGgcGCAAAAAGCCGAAGCCGCAGCAGACGCCAAATGAAAAGCCAAGCAATTGTTTAATGCTTCTGTGTACTTGGTGACTGTACAGTTTGAAATAACTATTTTTTACCAAGTTTTATATTAAGAATATCGTTTATAGTTTGTTGTTTGCCTTCATGTCCATTTTTAATGAAGCCGCCCACACCCTTGCTAAAATATTTTGCCCTCGATTAATTGGTTTTAATCACCTGGACAGTTTTCTGGgtcttttaattatattttagacACCAAACATTCTCATAAGGCAGCTATAGTGTGTTTTAAACTGTTCTCGTGTGCTTacagaaatactgtattttaattCTTGCATTATGTTTATTAACGCATTTAAGACAAAACAATCACTAAATTTTGAACAGAAAGTCAACCATGGATAAATTCATAATATGAAGTCTccaaactgttaaaaatgttgtttttattctaAGTTATATACACCAATATTGGAAAGATGATTTGTGACTCCTAAAATCACTTGTTCTAAATggttttgaataaaataaagatttca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU386648 lncRNA upstream 32411 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA upstream 39682 4348781 ~ 4351847 (+) True G326281
TU386524 lncRNA upstream 418527 3967532 ~ 3973002 (+) True G326193
TU386508 lncRNA upstream 445396 3945382 ~ 3946133 (+) True G326178
TU386457 lncRNA upstream 510588 3880677 ~ 3880941 (+) True G326131
TU386681 lncRNA downstream 3900 4398678 ~ 4406561 (+) False LOC113532991
XR_004576935.1 lncRNA downstream 71730 4466508 ~ 4468850 (+) True LOC117595758
TU386730 lncRNA downstream 147649 4542427 ~ 4542695 (+) True G326359
TU386740 lncRNA downstream 184772 4579550 ~ 4587322 (+) True G326369
TU386745 lncRNA downstream 254247 4649025 ~ 4656515 (+) True G326374
XM_034298281.1 mRNA upstream 2068 4378023 ~ 4389461 (+) True dhdds
XM_026924919.2 mRNA upstream 87999 4294369 ~ 4303530 (+) False si:dkeyp-97a10.2
XM_026924920.2 mRNA upstream 88000 4294370 ~ 4303529 (+) True si:dkeyp-97a10.2
XM_034297820.1 mRNA upstream 103299 4283659 ~ 4288230 (+) True LOC113532664
XM_034298293.1 mRNA downstream 3881 4398659 ~ 4434251 (+) False LOC113532991
XM_034298292.1 mRNA downstream 3888 4398666 ~ 4434251 (+) True LOC113532991
XM_026924760.2 mRNA downstream 31808 4426586 ~ 4434251 (+) False LOC113532991
XM_034298294.1 mRNA downstream 35383 4430161 ~ 4434251 (+) False LOC113532991
XM_026924511.2 mRNA downstream 106709 4501487 ~ 4545347 (+) True slc9a1a
TU386582 other upstream 377991 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 1821790 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2177230 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2177268 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2247018 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 526202 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 530008 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 937490 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3507014 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3993409 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile