RNA id: XM_034298293.1


Basic Information

Item Value
RNA id XM_034298293.1
length 3587
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113532991
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4398659 ~ 4434251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTAACCAGCAGCCTGAACAGCGTGTGCTCTCAGCGTCTACACGTCCAcacgcacgtacacacacgtCTACACTTCTCGCCTGTCTTCTCCCAAGAGCGTCCTCTCTTTCAGAGGCAGGTAGCCGGTGAGGTTCAGACCCAGCCTCAGGACCGCTCCCTGAACCAGATCGCCATGATGCTGGCCATTATGGGTCTTAGCCTGTCCTACTACAGCGCCAAACAGATGACTGAGAAGGTGCAGCGTGGCCCAGTTCCCTGAACACAGCCATGACCTCTGATCCATTTGAATCTTGGAGGAGGAATATAAGCCAAATCGGACATGGAGATTTGAAGACCTTATCCAGCACTTTTTCTACACCACGTCACCAGAAGCCTGGATATTCTGGGTTCAGACAGCATGAGATGGGTTCAGGGTTTTTTAGCGAGCAATGTCGACAAAAAATAGTGTTCAAACATCACCTGCGTCTTGATGGTTGCACTGGTACATTCATCAGGGTCCCTTAATACCTCCAAGGCCAAATCTTTGGCTTAATCTTCTCAATGATTCCTATTTAAAGGGAAGGAGCCAGTCACTGGTGCTTTGGCATAGAATAAATGCCTTTTAAAGGGAAACCCTCTGCCTTATGTATCAAGCAACTATTGAAAGCAGGTTGCTTAAAAAACTAGGGATATTTTTCAGGGCTCCTAAATGGAGACAAGGCATTGCAGGAATCCTGCAAACTCGCACTGCAAGAGCAGTACCAAACTACActattatatgaaataaaaggtCTGTTTGGTGTTAAACATAGATTTCTTTTACTGTACTGTTAAGTAGCCATGGTTATCAAGATTTACGAGCCAAGacttttaaatgttaaaggACCGTTAacaagtgcatgtgtgtgaagaTTTTAAAGAATCCAATATGTGATATTGTCATAAATGACCTTTATATGAATGTATGTTGATATTGAAAACTTGATTAAATAAAGCTGTGAACATGTTGAACAAGTAATGGATGGTGACATCCTGGCTGAAAAGTTTGGAATGGACTTGAACTGGGATGAAATATTGTTCTAGAAAGTCAGTCTTCCCTATGGTGAGAGCTTTACTATATATTTGCAAAGTACATGATGGGAGATTCCTAGGATATTTGATAACCTaggatattaaatatattaaacctGTTGCTTCACTTGAATCCCCAGACTGGCCAGTTTGACAGGAAGTGGCTTAAAAGGCTTTATGCAGAGAATTTCTTTTCCCCACCAGTCAGATATTATTTGATTAAATTCAGTTTCTGCCCTCTAGATAAAATGAGTCAGCTGATCGAGTTCTGTTTCTTATAAGATCTGGCTCAGCAAAATCATTTCCTGTATCTCCACAGAAGAATGCCATCTGCTACACAGGAAGTGGTCATGCGTGTAGGCAAGAACTTCCTCTATATGCTGGCTTAGCAGTAATGTATAACCTGAATGGTGTGCAGGATTAGAGCTAGCTTCAACTATCTGTGGGGAAACTGTAGCGCAGAGATATGAAACTCCACCCCAAGCTGATGGAATAAATCAGGGGCTTCTGCAAGCAAACCTGAACAAATACAAGATCATGAAGGATCTCTGACCTGGATTTTGGACTCcaaccactaccaccaccaccatctttGTCCATCTGTAATGTTTGAAAGCTTTTTGCAGATGGACCACAGACAGGGTTGAGAACGTCTAAACTGAATATAAAGCCCGGAATTCAGTCGATGCTGGTTTGACCAGACATTTGAGGGACTTCTTGTTCTCAGTTTTCACTTTGCCAGGGTTTTTTGGAAGAAGTGAGTATGAATCCGCTGTGGAAAGTGTACAAGAGCAAGGTGATGAAGACCCTCAACCCTGACGCAGAGGAAGAGCCTGCTGAAGAGGTGTGTGAGACACCAGAGGAAATGACTCCAGTCCAGCATGATGAAGGACCCAGTGCTGTGTCTCAGCTGGCGAAAAGAGTGCAGGGCGTGGGGACAAAGGGCTGGAAGAGCGTGGCCGCTCTATTTAATAAAGATGATGAGCACCAGCTCCTGGAGTCTGAGACTGAGAGTCAGCCTGTTCCGGACCACCCACTGGCGATGAAGCCAGAAGAGCCGACGCGACCCAACAAACGCAACACAGGATTCTGGGATGCCTTTGCCACCAAGTGGAACCAGGCAGCGGCTATGAAACAGGCTGAAGCAGCGGAGGCAGCCGGTGAGGGTGGATCCGATGGGACGAGTCAGGAAGAAGGGAATCAGGCAGGAGCGGAGAACACAGTGGGAGAGGATGGAGGTGGGCAGGGCAACAGCTTCTCCAGATATGCCTCTCTGGGCGGGGCCAATGATGATGCATCTGCCTTTAAATGGAACTTTGTGACCACCAAGCTGGCAGAGCTGAAAAGCAAAAGCATGACCAAGAGCAACTAGCCAATGACATAAGAGGACACCagagacagaaaatgagaaaaggaTGGAATTTTGTCTGTATCTGGATTGGTTGCTCTCTTTGAATGAACCTGATTaatcacaatctcctctttggCTTCCAGCTTTACTTGATATACTGCTGCATGACACACACTCTTCAGGGACTTATGCACAACAGGCACTATTCAAGCTACAATCTTACGTCTAACATGTTGTACAATCACAATATTTTCCTGATGGCAATTTTTCTCTGTAGCATAAGAAACATCCCCGTTATTTTGCACTATAAGTATAATCTAGTTTAGTTTTATTCCTGCTAGCATTTCTATGGATTCTTTTCCTTCAAACCATCTCCCAGACCTGAATAACATAACTGTAAGTCCATCATCTTGAACAAGTCATCATATAAGAAGTCATCATGTTCTTTATacctttattatttaatcagtaGCTACAGTCTTATCACTGCTGCTATGATAATGCTAATTTCTGCTAGTGCAGATAAAGGATTTACACTAACATGTTTTGCTGCATTATATTGTACTCaataattagaaaaaatatGATAACTGACTTAGAATTATACAATAGAATGATGATAGAATGATTACGTCATTTGAGCACAACTGAATGTAACATTATCATCAAGCTAATATATAGTAGTGTCTATTTACCAGATCAACAAGCTAACTACAGTAATTTCTGAATTAGCATGCCCATAGTAAACACATTTACGAATAGACATATTCAAATTAGACAAAAGCGAACGCTGTATAAGTCAAAATACCTGCTTCACGGCAAAAAACATGGTAATGTAACAATATAAATGAGGTTACTATTGGTAGACGGGCACAAAGGATGCACTTTTGTCTAGGAGGAAAATAGGAACATGTGAGTTCTGATTGTTTTCTGCTTGTCCTAGTTCCTGTCTGGCTTCTCCTAAATTCAGTTTGGTTAAATATATGACACCAGACTCAgagtttctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgagagagagaccttcAGACAAACCCAAATGCCGATATGTGTGAACATTTGGGGAATGTTGTTGTCCTAATGGTGCCTGCTGTAAGCTGTTTGCtctcttgtttatttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386679 lncRNA upstream 3875 4391584 ~ 4394784 (+) False hmgn2
TU386648 lncRNA upstream 39541 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA upstream 46812 4348781 ~ 4351847 (+) True G326281
TU386524 lncRNA upstream 425657 3967532 ~ 3973002 (+) True G326193
TU386508 lncRNA upstream 452526 3945382 ~ 3946133 (+) True G326178
XR_004576935.1 lncRNA downstream 32257 4466508 ~ 4468850 (+) True LOC117595758
TU386730 lncRNA downstream 108176 4542427 ~ 4542695 (+) True G326359
TU386740 lncRNA downstream 145299 4579550 ~ 4587322 (+) True G326369
TU386745 lncRNA downstream 214774 4649025 ~ 4656515 (+) True G326374
XR_003403355.2 lncRNA downstream 366321 4800572 ~ 4803511 (+) True LOC113532560
XM_026923895.2 mRNA upstream 3875 4391520 ~ 4394784 (+) True hmgn2
XM_026923894.2 mRNA upstream 3881 4391529 ~ 4394778 (+) False hmgn2
XM_034298281.1 mRNA upstream 9198 4378023 ~ 4389461 (+) True dhdds
XM_026924919.2 mRNA upstream 95129 4294369 ~ 4303530 (+) False si:dkeyp-97a10.2
XM_026924920.2 mRNA upstream 95130 4294370 ~ 4303529 (+) True si:dkeyp-97a10.2
XM_026924511.2 mRNA downstream 67236 4501487 ~ 4545347 (+) True slc9a1a
XM_026924220.2 mRNA downstream 121874 4556125 ~ 4770616 (+) False LOC113532696
XM_026924218.2 mRNA downstream 127005 4561256 ~ 4770616 (+) True LOC113532696
XM_026923880.2 mRNA downstream 408208 4842459 ~ 4856152 (+) True ifnlr1
XM_026924871.2 mRNA downstream 430318 4864569 ~ 4918469 (+) True myom3
TU386582 other upstream 385121 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 1828920 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2184360 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2184398 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2254148 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 486729 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 490535 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 898017 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3467541 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3953936 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile