RNA id: TU386745



Basic Information


Item Value
RNA id TU386745
length 208
lncRNA type intronic
GC content 0.39
exon number 2
gene id G326374
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4649025 ~ 4656515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TGAAAAAGCACTTTGAAACCATCTGATGGAGTAAAGACATTTAGCTTCTTCACTTTTTGTTAAAAGAATCAAGTGAGTTGTATAGCGTATGGTGTGGTTTTTGTAGATGAAACTGCCTCCAAGAACAGCATCATATGCATCCATCAAAGAGGTTAAATCCTTCTGGCCTTGGTCCTGGCCCTGCATGCTGtctgtggtgttttttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU386740 lncRNA upstream 61703 4579550 ~ 4587322 (+) True G326369
TU386730 lncRNA upstream 106330 4542427 ~ 4542695 (+) True G326359
XR_004576935.1 lncRNA upstream 180175 4466508 ~ 4468850 (+) True LOC117595758
TU386681 lncRNA upstream 242464 4398678 ~ 4406561 (+) False LOC113532991
TU386679 lncRNA upstream 254241 4391584 ~ 4394784 (+) False hmgn2
XR_003403355.2 lncRNA downstream 144057 4800572 ~ 4803511 (+) True LOC113532560
TU386800 lncRNA downstream 147322 4803837 ~ 4804059 (+) True G326429
TU386812 lncRNA downstream 267663 4924178 ~ 4924636 (+) True G326440
TU386834 lncRNA downstream 326958 4983473 ~ 4983680 (+) True G326458
TU386818 lncRNA downstream 328975 4985490 ~ 4989316 (+) False klf10
XM_026924511.2 mRNA upstream 103678 4501487 ~ 4545347 (+) True slc9a1a
XM_034298293.1 mRNA upstream 214774 4398659 ~ 4434251 (+) False LOC113532991
XM_026923880.2 mRNA downstream 185944 4842459 ~ 4856152 (+) True ifnlr1
XM_026924871.2 mRNA downstream 208054 4864569 ~ 4918469 (+) True myom3
XM_026924089.2 mRNA downstream 264658 4921173 ~ 4923671 (+) False fabp10a
XM_026924600.2 mRNA downstream 268266 4924781 ~ 4930155 (+) False srsf10a
XM_026924263.2 mRNA downstream 327900 4984415 ~ 4988847 (+) True klf10
TU386582 other upstream 635487 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2079286 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2434726 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2434764 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2504514 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 264465 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 268271 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 675753 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3245277 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3731672 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile