RNA id: XM_026924089.2



Basic Information


Item Value
RNA id XM_026924089.2
length 536
RNA type mRNA
GC content 0.47
exon number 4
gene id fabp10a
representative False

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4920980 ~ 4923681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GTACAAGCCTCTACAAGCTGAACAGAGCTTCAGAAATCCATCTTGTGGTGAAGGAGACACCAGAGAGGATCGGCAAAAATGGCCTTCAGTGGAACGTGGCAGGTGTATGCTCAGGAGAACTACGAGGAATTCCTCAGGGCCATATCACTACCTGAGGATGTCATCAAGCTGGCCAAAGATGTCAAACCTGTGACAGAGATCCAACAGACAGGCAACGACTTTGTCATCACCTCAAAGACCCCTGGAAAAACGGTCACAAACTCCTTCACCATCGGCAAAGAAGCAGATATCACCACCATGGACGGAAAGAAGCTCAAGTGCATTGTGAGGCTGGAAGGAGGAAAGCTCATCTGTGAGTCAGACAAGTTCTCACACAAGCAGGAGATCAAGGGTGGAGAGATGATTGAGACTTTGACTGTAGGAGGTACCAGCATGGTCCGGAAGAGTAAAAAGCTGTGATGTGACTTGGCCTGCTGAAAATGTCTCCAGTTCAAAACATGccatctatttaaataaaactgtcatTTGTCAAAATA

Function


GO:

id name namespace
GO:0006810 transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0032052 bile acid binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU386800 lncRNA upstream 117114 4803837 ~ 4804059 (+) True G326429
XR_003403355.2 lncRNA upstream 117662 4800572 ~ 4803511 (+) True LOC113532560
TU386745 lncRNA upstream 264658 4649025 ~ 4656515 (+) True G326374
TU386740 lncRNA upstream 333851 4579550 ~ 4587322 (+) True G326369
TU386730 lncRNA upstream 378478 4542427 ~ 4542695 (+) True G326359
TU386812 lncRNA downstream 507 4924178 ~ 4924636 (+) True G326440
TU386834 lncRNA downstream 59802 4983473 ~ 4983680 (+) True G326458
TU386818 lncRNA downstream 61819 4985490 ~ 4989316 (+) False klf10
TU386838 lncRNA downstream 96111 5019782 ~ 5029790 (+) True G326462
TU387473 lncRNA downstream 387560 5311231 ~ 5314589 (+) False acbd7
XM_026924871.2 mRNA upstream 2704 4864569 ~ 4918469 (+) True myom3
XM_026923880.2 mRNA upstream 65021 4842459 ~ 4856152 (+) True ifnlr1
XM_026924220.2 mRNA upstream 150557 4556125 ~ 4770616 (+) False LOC113532696
XM_026924218.2 mRNA upstream 150557 4561256 ~ 4770616 (+) True LOC113532696
XM_026924511.2 mRNA upstream 375826 4501487 ~ 4545347 (+) True slc9a1a
XM_026924600.2 mRNA downstream 1110 4924781 ~ 4930155 (+) False srsf10a
XM_026924263.2 mRNA downstream 60744 4984415 ~ 4988847 (+) True klf10
XM_026924264.2 mRNA downstream 60745 4984416 ~ 4988847 (+) False klf10
XM_034297979.1 mRNA downstream 84873 5008544 ~ 5019097 (+) True atp6v1c1a
XM_034297834.1 mRNA downstream 123295 5046966 ~ 5056667 (+) True cep72
TU386582 other upstream 907635 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2351434 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2706874 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2706912 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2776662 2142506 ~ 2144511 (+) False bola1
TU386814 other downstream 1115 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 408597 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2978121 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3464516 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3691402 8615073 ~ 8665836 (+) False G329111

Expression Profile