RNA id: XM_026924600.2


Basic Information

Item Value
RNA id XM_026924600.2
length 1686
RNA type mRNA
GC content 0.48
exon number 6
gene id srsf10a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4924781 ~ 4930155 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGACTACGACCAGCCACGAACGCGCATGCGCAGAACCAAAATTCCCGACGTTGGCGGCCTACGAAAAAGGTCCTTCGGTGTGCTTCGACAATTTATAGTCGGTTTAGTGCAACATGGCGCGGTATTTGAGGCCACCAAACACTTCTCTTTTCATCAGGAATATTTCTGATGAAAGCAGGCCAGAGGATTTGCGTCGTGAGTTCGGTCGTTACGGCCCTATTGTAGATGTCTACATTCCCGTTGACTTCTATTCCCGTCGGCCAAGAGGATTTGCATACATTCAGTTCGAGGATGTCCGCGACGCCGAAGATGCTCTTCACAATCTGGACCGGAAATGGGTCTGTGGACGGCAGATTGAGATCCAGTTCGCCCAAGGAGACAGGAAAAcCCCGAGTCAGATGAGGTCCAAAGAAAGGCGTTCTCCTCGCAGCTTCTCCAGATACGACGATTATGAGCGCGATGGCCGTTACCGGCGCTCTCGGAGTCGCAGCTATGACAGACGGCGCTCTCGCAGCCCATCATACGAGCGCAGACCTCGCCGCTCCGATAGTCCCAGAGACTCCCGCTCTTATGGCAGACACAGACGAAGCAGAAGCCGTGACAATGACAgGTCAAGGCACGGACGAGATCACGGTCGAGGGCACCGCGGCGCTCCCTCTCGCAGCCGCTCGGGTTCGCGCTCCCCCTCCCCTGACGCCAGGATCAAGATGAAAAGCAGGAAGTCCCGTTCCGGGTCACGCTCACCCCGTCCAGCTGCAGGAGAGGACGCACCACAGTCCAGCGGTGCACGAGAGGACGAGGACACCCGCGCCAGATCAGCTTCTCGCTCCTGCTCTCGCTCAGTCTCACGCTCCCGTTCGCGCTCTCGCTCCAGATCCTGGGCCGGACGCAAATCCGGAGGCCATTAGGACTCTCAGTGTGAGGACCAGAGTTGTTTAATACTTGTAACTCATGCAGCTCTCTGGCAAACTGTAAAACCGATCATGTAAAGGCCATTTTGTTTTGGTTAGTTTACGTTTTTGCAGGTTTGCTTGGGAAAATGTGATTCTTGTCTCCTGTTCAGAAGTAGGTTTCAGGATCAGTGGATGTTTGTTTGATAAACACAGACctgcattattattactgattattattCAGATGtgattcagtgttttttataGCTCATGGTTTTGTCCCTCAGTTTGTTCAGTTTGGTGATTTTGCTAAACAAAGGCTGGTGTTTAACTCATCACCAAGAAGTGTATAGTCTCAGCACATGCCTTTGATCAAAaatacaggtttatattgaaTTTATTCTTGTATTTTGTTTAGGCGTATAGTTAGAAAAGGAAGCATTGTAGAGAGTgcagtatttcagtgtttattttctgtatcTGATCCGAATGTTTTTGGTTTGTACAAATCTTATTTTAATCTTGCGTCGCTAACATGGACATCCAGCCATTGTCCCCTCAGATATCTCTTAGACGTCTTGTAGAATCTCAGTTGTCTTCCAGGAGAGGAAACATTGAGctttccccccttttttaaaaaagttgttTGATAAATGTATTCTTTGATTTTGTTATCCTGTCATGTTGCTGAACCTATGGCAATGTTTTACTCTTTTCATGCTGGAGATGGatcagaggggagagagagagctcctgtgtgtgaataaaaatgtacactttGTTGTTTAAAACA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386812 lncRNA upstream 145 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 120722 4803837 ~ 4804059 (+) True G326429
XR_003403355.2 lncRNA upstream 121270 4800572 ~ 4803511 (+) True LOC113532560
TU386745 lncRNA upstream 268266 4649025 ~ 4656515 (+) True G326374
TU386740 lncRNA upstream 337459 4579550 ~ 4587322 (+) True G326369
TU386834 lncRNA downstream 53318 4983473 ~ 4983680 (+) True G326458
TU386818 lncRNA downstream 55335 4985490 ~ 4989316 (+) False klf10
TU386838 lncRNA downstream 89627 5019782 ~ 5029790 (+) True G326462
TU387473 lncRNA downstream 381076 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 611203 5541358 ~ 5541889 (+) True G327071
XM_026924089.2 mRNA upstream 1110 4921173 ~ 4923671 (+) False fabp10a
XM_026924871.2 mRNA upstream 6312 4864569 ~ 4918469 (+) True myom3
XM_026923880.2 mRNA upstream 68629 4842459 ~ 4856152 (+) True ifnlr1
XM_026924220.2 mRNA upstream 154165 4556125 ~ 4770616 (+) False LOC113532696
XM_026924218.2 mRNA upstream 154165 4561256 ~ 4770616 (+) True LOC113532696
XM_026924263.2 mRNA downstream 54260 4984415 ~ 4988847 (+) True klf10
XM_026924264.2 mRNA downstream 54261 4984416 ~ 4988847 (+) False klf10
XM_034297979.1 mRNA downstream 78389 5008544 ~ 5019097 (+) True atp6v1c1a
XM_034297834.1 mRNA downstream 116811 5046966 ~ 5056667 (+) True cep72
XM_026924631.2 mRNA downstream 166986 5097141 ~ 5105422 (+) True trip13
TU386810 other upstream 1100 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 911243 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2355042 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2710482 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2710520 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 402113 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2971637 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3458032 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3684918 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3838590 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile