RNA id: TU386818


Basic Information

Item Value
RNA id TU386818
length 2917
lncRNA type sense_over
GC content 0.41
exon number 2
gene id klf10
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4984415 ~ 4989316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acagcctctggTGGTCACGACtgcagggtcaaaggtcactgcCGTCAGCCCCATAGCGACGAACCCGCCACGGCTTCGTTGCCACACCTGCACCCACGCTAACTGTGGTAAAACATATCTGAAAAGCTCCCACCTGAAAGCACACCTGCGCACGCACACAGGTGAGAAGCCGTTTAGGTGTCAGTGGGAGGGCTGTGAATGGCGATTCTCCCGCTCAGATGAACTCTCCCGGCACCGACGCACTCACACAGGGGAGAAACGCTTCACCTGCCCCGCATGCCACCTTCGCTTTACACGCAGCGACCACCTGGCCAAACACAAGCGTCGCCATTATATGGCTAAGAGAGCTCCGGCCTGGCAGGCACAAATCAGCCGGACTGGCAGCTTCAGTGCAGGAGCACGAACTCTCCTCCCCATCACACTTAAGCCACGGGTCTGAAGGAATGACTCAAAGAAAGAGGATGGATGCTCATGTTAGGATTGGTTACTGCACTTTCTTCAAGTTCGGTGTGGGCAACAATGcactttatacagtatattagctCTAATCAGTCAGGTGCAGATAATCGTTAGAGTTGGATACGGAAGGAGGTTTAATTTTTTCTCAGCATTTATCAGGCTGTAGATGGATTCACAATCTAAACCTTGATCAGGCTTGgacaaaacattttcagaatgTGTCTGGATGTTTGAACTGCATTCCAAGCTCTAATTCATTGATAGACCTTGTTAGcgtaaagaaataaacatacaCTTAAGTACACTCATTTACTGACAGTGTAATGCCAAACAGACCAACATGTACATTTCCATCTGAGGAATCGAATACATCTGAATGACACtcaagtttgttttagtaaacCGGGAAGCTTGTCCATCTTCTACACGCGTCCCCACGTTACCAACCTACTCCAACAGCACTTACAGAAACCATATAGCACTTTCTTTAGCACACTTCAAACGGCACATATACATCATCAACATACAACCAAAAGCTTCTAGGCATGTGCAGATAATTGGACATGTCTCAATATGTAACACACAAAACACGTGatactggaaaaaaatattgtcaCTGTGACTGTTTCATTCCGAAACAAGCACCCTAGCATAAGCAGAGTCCTTCACAGCATGaggtttttatgtgtttaaacACTGTGAAATGAGAACATGGTAATTAGCACTAGATCATGAGAATATTGTTAACTGCAAGAAGGGCCTAAAGTGAAATGTATACAATTTTCTCTAGCTGTAAgctcccttctttttttttagcaacattTATTTGGTAGCTTGAGCATAGAACTGTCAAAAAACAGTCAACATTGGAGATGACATGTCAGCACAGCacaagtaataaataaacactgattcTGACCAGCAGAAACAGCAACAGTGAATTATTTCCAGGAAAACTATTTCCATCCCTCATAGTTCATTGACACTGTTGTACAGAGGGGCATTAAACTTCtcagtgccagctgtaattcagttGACTTAAAAACAGGATGCAGTGGGTCAGTGGATAAACTGCATAATTTCATTAACTCCACTTCCCCATGTTGGTGTTAGTTCTGCAGCTGTAGATCTGAGGAATGAAAGATACACTTTTTAACGCGAACTTGCCTTAAAGAAGCACATGTCTGACACCAagcctgtttttatttttccactcaTCAACTACATTAAGATTTGAGATCTAATGTTCACACAAATATGGCTTTGAGTGATTACGGCGATATGAAAATTTAGAATCAGCACATGCCTAGAAGCTTCACATAGAAAACAGGACGATAAGGGGGAATTCATCTGCTTTGCCACGCTACTAAAATGAAGCCATGCAATTGTATTCAATATTGCAGTTCTATTACGATAAAAACTTTGCAGTGAGTCATTTTCACAGCATCATAGCTCTCCAAATTCCTAACACTTCATGGATAGGACgtgagaaaataatattttcccaCTAATCATCTGTGTTCCGATATTGCTTTTGACAAACACTTATCCAGCGCAACTGCAGCACAAGCAGAGGAGAGTGTAGCAATCTCTTTGTGAATCTCCATGCTAAATTGCAAGGAGTTACTAGCTGTCAGAAGTAGACAGCAGTGTTATCCCAGCCTTAACATAGCGATATATAGAGGATTTAGTCAGCCTCGTCAGCTCTTACTCCTTCTAGATGTTTACTCATGTTTCTAAGGTGGCCATCTATGAAACTTTACATATGTTTGTTAAGTAGATGAACATTTTTAAGATGGCAGCAAGAAAATCAACTAAGAGGAAATGGtaagaggaaattaaaaaaaaaaattaccacatGTGCATTAAGAACAGTAGCAGAACAGAGCTGGACTCAAATAACTCTAAAAATATCAGACTTCACAGCGGCAGAGCTGCACTGCCACCTGCTGACTTCTCAAACACCAGCATCATAAATACAtggttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtatgagGCTTCGTGTTCAATAAATAACACCCAACATCGTCTTGAAGgaaatattattacatatatgtgtgtttgtatatatttataaaactgaattaaatactCTAGCAGGTTTGTAAACAGCACTAACCATCAATCCCGCAAATGACTAAACCCAATTGTGACAATATACATGACCGTAAATGCATTTCTTCTTGATCCAATAACCTTTCCGAAACCTTGCTCATTGTATTCTGGTCCCAGAAGAGTCCAGAAGGTtcgttttttaattaaattagccAGTGAGGCTGCTGTAGCCCCAGAGCAGCTTTGCTTCGCTAAGCCGGAGTGGAGATGGCGCTCTCGCTCAGACTGGGCTTCTGAAAACATGGGACCAGGGAGAAGTTCTTCAGGGCTGTGTCCAGTGTGATGCCATAGTTTTGAATCTCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386834 lncRNA upstream 1810 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 60854 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 181431 4803837 ~ 4804059 (+) True G326429
XR_003403355.2 lncRNA upstream 181979 4800572 ~ 4803511 (+) True LOC113532560
TU386745 lncRNA upstream 328975 4649025 ~ 4656515 (+) True G326374
TU386838 lncRNA downstream 30466 5019782 ~ 5029790 (+) True G326462
TU387473 lncRNA downstream 321915 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 552042 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 616554 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 843677 5832993 ~ 5833262 (+) True G327385
XM_026924600.2 mRNA upstream 55335 4924781 ~ 4930155 (+) False srsf10a
XM_026924089.2 mRNA upstream 61819 4921173 ~ 4923671 (+) False fabp10a
XM_026924871.2 mRNA upstream 67021 4864569 ~ 4918469 (+) True myom3
XM_026923880.2 mRNA upstream 129338 4842459 ~ 4856152 (+) True ifnlr1
XM_026924218.2 mRNA upstream 214874 4561256 ~ 4770616 (+) True LOC113532696
XM_034297979.1 mRNA downstream 19228 5008544 ~ 5019097 (+) True atp6v1c1a
XM_034297834.1 mRNA downstream 57650 5046966 ~ 5056667 (+) True cep72
XM_026924631.2 mRNA downstream 107825 5097141 ~ 5105422 (+) True trip13
XM_034298188.1 mRNA downstream 109093 5098409 ~ 5105422 (+) False trip13
XM_034298189.1 mRNA downstream 109268 5098584 ~ 5105422 (+) False trip13
TU386814 other upstream 55336 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 61809 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 971952 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2415751 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 2771229 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 342952 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2912476 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3398871 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3625757 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3779429 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile