RNA id: XM_026924263.2


Basic Information

Item Value
RNA id XM_026924263.2
length 3113
RNA type mRNA
GC content 0.43
exon number 3
gene id klf10
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4984415 ~ 4989316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAAATGGGACCCGTGTCCCACTCATATGTTTGAAATGACTAAATGAGTTTGATTAATGTAACAGCTACATGAATCAGAATTTATTTAACACGTAGGATATTAGATGTATATTTTTGACTCATATTTGCTAGATATTTGCTAGATATAGAAATAAACCAGGGCCTCAGAGTTCAGTGTTATGGATACACTGAGTGAACCTCGTCGTGATGTAAGTAGCCTGAATGATCCCCGACAGTGCAAGTCGCCAGCACACAGCCCTCCATCTGCAGAACCGATTCAGAGTGAAGCACCCCGGTTCCAGGCCATCAGTGTGATTCGTCACACGTCTGATCCGCTGCCTCTTCCTTCTTCAGAGACATTCAACCCCGACCCCGACTCTTGCCCCATCAGCGCCACCCAGAGTCACAGCAGTGGCCCAAGTGACAGGGATTCTGAAGTAAATCTTGAAAATCTGAGCTCTGGCTGCTTCACCACGGCCTCCAAAACCCCTCCTGGTTTTCTCAGGATACTCCCGGCTTGTCCCACCACTGCGTCATCCGTAGCAGTGTTCCAGATGCTTCCATGTACATTGATCAGCACACCAGCTCCATCCACAGTTAATCCCCCAGTTTTAGTGGCCTCTCATGTTCCCACCATGGTACTGGTGCTTccaaagtcacacacacagcctctggTGGTCACGACtgcagggtcaaaggtcactgcCGTCAGCCCCATAGCGACGAACCCGCCACGGCTTCGTTGCCACACCTGCACCCACGCTAACTGTGGTAAAACATATCTGAAAAGCTCCCACCTGAAAGCACACCTGCGCACGCACACAGGTGAGAAGCCGTTTAGGTGTCAGTGGGAGGGCTGTGAATGGCGATTCTCCCGCTCAGATGAACTCTCCCGGCACCGACGCACTCACACAGGGGAGAAACGCTTCACCTGCCCCGCATGCCACCTTCGCTTTACACGCAGCGACCACCTGGCCAAACACAAGCGTCGCCATTATATGGCTAAGAGAGCTCCGGCCTGGCAGGCACAAATCAGCCGGACTGGCAGCTTCAGTGCAGGAGCACGAACTCTCCTCCCCATCACACTTAAGCCACGGGTCTGAAGGAATGACTCAAAGAAAGAGGATGGATGCTCATGTTAGGATTGGTTACTGCACTTTCTTCAAGTTCGGTGTGGGCAACAATGcactttatacagtatattagctCTAATCAGTCAGGTGCAGATAATCGTTAGAGTTGGATACGGAAGGAGGTTTAATTTTTTCTCAGCATTTATCAGGCTGTAGATGGATTCACAATCTAAACCTTGATCAGGCTTGgacaaaacattttcagaatgTGTCTGGATGTTTGAACTGCATTCCAAGCTCTAATTCATTGATAGACCTTGTTAGcgtaaagaaataaacatacaCTTAAGTACACTCATTTACTGACAGTGTAATGCCAAACAGACCAACATGTACATTTCCATCTGAGGAATCGAATACATCTGAATGACACtcaagtttgttttagtaaacCGGGAAGCTTGTCCATCTTCTACACGCGTCCCCACGTTACCAACCTACTCCAACAGCACTTACAGAAACCATATAGCACTTTCTTTAGCACACTTCAAACGGCACATATACATCATCAACATACAACCAAAAGCTTCTAGGCATGTGCAGATAATTGGACATGTCTCAATATGTAACACACAAAACACGTGatactggaaaaaaatattgtcaCTGTGACTGTTTCATTCCGAAACAAGCACCCTAGCATAAGCAGAGTCCTTCACAGCATGaggtttttatgtgtttaaacACTGTGAAATGAGAACATGGTAATTAGCACTAGATCATGAGAATATTGTTAACTGCAAGAAGGGCCTAAAGTGAAATGTATACAATTTTCTCTAGCTGTAAgctcccttctttttttttagcaacattTATTTGGTAGCTTGAGCATAGAACTGTCAAAAAACAGTCAACATTGGAGATGACATGTCAGCACAGCacaagtaataaataaacactgattcTGACCAGCAGAAACAGCAACAGTGAATTATTTCCAGGAAAACTATTTCCATCCCTCATAGTTCATTGACACTGTTGTACAGAGGGGCATTAAACTTCtcagtgccagctgtaattcagttGACTTAAAAACAGGATGCAGTGGGTCAGTGGATAAACTGCATAATTTCATTAACTCCACTTCCCCATGTTGGTGTTAGTTCTGCAGCTGTAGATCTGAGGAATGAAAGATACACTTTTTAACGCGAACTTGCCTTAAAGAAGCACATGTCTGACACCAagcctgtttttatttttccactcaTCAACTACATTAAGATTTGAGATCTAATGTTCACACAAATATGGCTTTGAGTGATTACGGCGATATGAAAATTTAGAATCAGCACATGCCTAGAAGCTTCACATAGAAAACAGGACGATAAGGGGGAATTCATCTGCTTTGCCACGCTACTAAAATGAAGCCATGCAATTGTATTCAATATTGCAGTTCTATTACGATAAAAACTTTGCAGTGAGTCATTTTCACAGCATCATAGCTCTCCAAATTCCTAACACTTCATGGATAGGACgtgagaaaataatattttcccaCTAATCATCTGTGTTCCGATATTGCTTTTGACAAACACTTATCCAGCGCAACTGCAGCACAAGCAGAGGAGAGTGTAGCAATCTCTTTGTGAATCTCCATGCTAAATTGCAAGGAGTTACTAGCTGTCAGAAGTAGACAGCAGTGTTATCCCAGCCTTAACATAGCGATATATAGAGGATTTAGTCAGCCTCGTCAGCTCTTACTCCTTCTAGATGTTTACTCATGTTTCTAAGGTGGCCATCTATGAAACTTTACATATGTTTGTTAAGTAGATGAACATTTTTAAGATGGCAGCAAGAAAATCAACTAAGAGGAAATGGtaagaggaaattaaaaaaaaaaattaccacatGTGCATTAAGAACAGTAGCAGAACAGAGCTGGACTCAAATAACTCTAAAAATATCAGACTTCACAGCGGCAGAGCTGCACTGCCACCTGCTGACTTCTCAAACACCAGCATCATAAATACAtggttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386834 lncRNA upstream 735 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 59779 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 180356 4803837 ~ 4804059 (+) True G326429
XR_003403355.2 lncRNA upstream 180904 4800572 ~ 4803511 (+) True LOC113532560
TU386745 lncRNA upstream 327900 4649025 ~ 4656515 (+) True G326374
TU386838 lncRNA downstream 30935 5019782 ~ 5029790 (+) True G326462
TU387473 lncRNA downstream 322384 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 552511 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 617023 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 844146 5832993 ~ 5833262 (+) True G327385
XM_026924600.2 mRNA upstream 54260 4924781 ~ 4930155 (+) False srsf10a
XM_026924089.2 mRNA upstream 60744 4921173 ~ 4923671 (+) False fabp10a
XM_026924871.2 mRNA upstream 65946 4864569 ~ 4918469 (+) True myom3
XM_026923880.2 mRNA upstream 128263 4842459 ~ 4856152 (+) True ifnlr1
XM_026924220.2 mRNA upstream 213799 4556125 ~ 4770616 (+) False LOC113532696
XM_034297979.1 mRNA downstream 19697 5008544 ~ 5019097 (+) True atp6v1c1a
XM_034297834.1 mRNA downstream 58119 5046966 ~ 5056667 (+) True cep72
XM_026924631.2 mRNA downstream 108294 5097141 ~ 5105422 (+) True trip13
XM_034298188.1 mRNA downstream 109562 5098409 ~ 5105422 (+) False trip13
XM_034298189.1 mRNA downstream 109737 5098584 ~ 5105422 (+) False trip13
TU386814 other upstream 54261 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 60734 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 970877 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2414676 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2770116 2210222 ~ 2214299 (+) False LOC113533074
TU387482 other downstream 343421 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2912945 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3399340 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3626226 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3779898 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile