RNA id: TU386838



Basic Information


Item Value
RNA id TU386838
length 6545
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G326462
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5019782 ~ 5029790 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


attgcatttgtttattatgaTCAGCCAGATTTTGGGAAACAAAAATGATCACAGTCACAGATCCAATGCACAAGCACAGATGTACATGCAATTTCCAGTTGTCATTTGTACGAAGTTACAGATTCAGCCAAGTTCCATAAGTCTTTTTTCAAAATCTTGAGGCATGAGGAAAGTCCATCATAGTCCTTCATAGTTGTGTGCTCCTAAACCCGTAACACCGGACACTGAAATTTGTGTGGTTCTGTCTCAGATGCCATCTGGCAGAAATGGCTGTTTAAATGATGAGGGTCTTGCTCACAGGTCCATATAGTGCCTCTCAGTTCTGCGATATGAACTCACAACCTCCTGGTGAGCCAGTCCTTACAGGGCTTGCAGAAACAGCATATCATGTCTAAGGACTCTGGTGCGTTTTAGTAGTGTTGTGCTTAGCTTCAGTTGCTGTAGTACTCAAGGAgctgtgcattttgtttttagggAATCTGTGAACCATCACTAGCTTTATGGAACAGAGAAGGCAAAAATTATAAggcaaaaaaatacagcttatgTAGATTAAATGCAAGAAACATttctttgggaaaaaaaaaattgtgcaactggaattcattcatttcaaaaaTGATTTCTCAAATGAGCAACCAGGCATCATTAATGTTCTCATATCactggctgaaaaaaaaaaattagactgTTATTACTCTTAGTCCGTGACCTAGcaaaccagtatcaggatgtatttactGATAGAGATTTCAAAGcagttctgtaagttgctctggatgagggcgtctgccaaaagccataaatgtaaatgaacacCTACATACtacttcattaatataaaataataaaataaaaaataatttgatacGAGTTTGTACACTTCTAAAGGCCTAAAATATTGCCATAACATTCTGTACATGCCTAAACTGTAATGCAGTATTGTGAAATAATGCAGATATATTACATTTGCAAGTCTTGGtaaactcatttttaaaagaataatgtGATAACATGTAAACACAGTAAAAATGTCTAATGATTCAGGCTCAATGAAGAAGGCATTGGGTGAGGTACAGAAgggtttgttattattattattattattattattattatgttcaaTTTGAGAAAccagatttcattttaattacattttcgGCTTTTAGAATGGGCTAATATTGATTTGGCAAATCATCTCCCaggatattttaatataaatgtgttgtGCTTATTACAGAACCCCTGACTTTGAGAACCATTGTCGCTCAAAACTGAGACTCCAGTTTTCTGTGTCTCCTGCTTACTTAAGACATTTGGGAATTTGTGCAGGTAtttaatattcactatataaaGCATTAATTATAAGTTGAAGTCCAGTAGAATAAAATAGATTACAGTAACTTAATGGAATTGAGAAAGTCAACCACTTTAAGTCAAATAAACAGCTTAGAGTTTGCAGGCtatgtagaaaaatgaaaaagaacaaaaatacaggAAACCTGCACAATTACATTCTTTATACGAAAGAAAAACTTGATCAATTATTTCAATTAATACTATTATTGACAATGTTCACATGGagaaatacaaacaaatgatGGACTCCATACAGTATGCTGAACAACTGAAATGTGGAGGGATGTAGACATTACCCATCATGCACCACTGAAAAGAAAGTAAGGGCTTTATATTTAGTAGCAGATAATGGAGAGAACCAACATGGCTACCAGTGACACTTCACATCAAACTGTTGAGAACAGTACTGACATTTGGCAAAATCTCATCACTTTGTCACTGGGATTAGAGTAATAAAGGGGATTTAGACTGGGACTGGCAACATGGCATCATCACAACATCTCACTCCAGTGGCTAAACAACAGCATGTCACTCgattcatataaaaataaatacagctgtacacctgcagcaaatacacatatttacaaGACAAAATGGAGACTGTTTCAGTCCAGCCTGttgtacattacacacatcataGGATATGACAAGACATGTGCCCATAATCAGTTTTATACCATGGCCATGGAAACGGAGTCAAAAATGCCTTCACAGTTCTACTTTTTATTCACTGATAATATTTCTAAATTCGGATTAAGGTACTGTGTTTGCCATACTGATGAGAAAATGCCACACAAACAACCCTGTATTCACTCCTTCGGATGTTTTCTGGTAGCTTTATCATTCAATGGCGCCATTTTTCAAAAAGGCGGAATTATGGAAGCCCAGTTAGCAGTTGGCGCTAACTGTATTTAGAGCGTAATTTTAGCTGTATGGAGCATTTATTTAGTCATtaaccaacacatctgaggtaaatgttgatattctaGACAACTTTGTCTGGTTtctgcattctctctctgtttacatTCTCTACAATAAAAGACTTCCAGGttacttgctagctagctatctagctaaatTCTTCACCTCAGTCATTAACTAGCCTCCACTCTTAGCAGTTGACAGATTCCCAGTTGATTAGCAGCACTGTAAATCAGCAAGTATAAAATAGCAGCTGactgaataaattaaatacatttatttgctCATAATTTTCTAGTACCACCTCACTAAGCGATAGTACCTTGTAGTGTGAACTTGACAACGTtttttgcacacatttttatacattttccccccttaataataaagtattggcacccttagaTTAAATTAGGTGTGATCGCTTTGTCTCATGTTCAATAATACTTTTGATAGGCATCAGGACCaaaattttaaagtaaaataagtaTTTTTCTGGTGATTACATTAAAAAGTACTTAATTAGTCAACTACCCATACCTgtcatgaataatcatgcatatttaaaggtaaaaatatgaattaacatttgtgtaaatgtattcCTGAGTCAAAGCGATAGTTCTGTCCACCATTTTAAACCTTCCAGTGAACAGTATTATAGTACTGCCTTTCTTCTCTCATTTATATGTGTCCAAAATAAAGGCTCTCAGTCAGACTGCTGTCCTTCTGCTGTTTTCAGACATGACAGACTTTATCTCAGGAGCTCGGGGGGTGTGGAGATATTTTGAAGTGtccacaataacaacaatgtgTTGCATATCTTCTAACTGattatcggcacatgcctaTTTGTATGTACACTTGCACAAATCTCTTTAAGAAGAAGTCCTACATGTTTAAAAGAATTCTATGGCCACCATATTTCACAGTCAACAGCTCACATTGTAGTATAACAGAGGGACATGAGGACTCCACTTTAGGAAGTATATCGGTCTAGTCCAAGTTAACTTTCTTTAAATACATGATTTAGACCTCATGAATGGTTCTCTCAGATGGCCGGTACTCGGATCCTGTGGCTGAGGACGCGATGAATGAGTGTGTCTTGCGCTTCATTCGGCCGCGTTTGGTGGCCAGGGAAATGCTGTGCTTGCTGGATGAGATGATGTCTGAGATGAACCTCTTGCAgtctacacacacctccatGGTGCTCCAGTCTTCAGTCAGCTCCTTGGGGAGCTCAATGTCCTCACGTGAGGACGACGTTGAAGACTGACGCGATGACTTGGACAGTCTGAGAGGAAAATGCATGGCTTCATCCTGAGCAGCTacttcttttattaaaaaatttgaaTTGAGCATGCAAGAGTTCCTTATTGACCCACTAAGGATCTGGAGCTCTGTCTGCACGGAGGGACGAACTGTCGGACGTTGGTGGGTGTCTCCTTCTCTATGGAGTGTCTTCTCTGTGCTGGCTGCTTCCTCTCCGGCTGCGGTGTGGAGGAGATGGGCAGGAACATGGACTCCGGTGATGTATCCTCAACTATCGGCGTGGAGATGCTAGAGCTGCTGGCTGACCTTTGACCCACTGTCTCATCCTGCAGAATGGAACAGACAGTAATTAATAGTTATGGTAATCTTTATGtgttCCTTCATACACACTCACGTCTGAGTCTGAGCTGCCCAGTTCGGAGAGAGTGGGGGCATGGAGTCTCTTCCTCTGGAAGCCGCTGGTGCCATTTGATTGGAGTGACGAGCCATTAGCTAACGAGAGTGAACTGGATGCCTTCCTTGCTGCATCAGGGGCCGAGACGTCTGGACAAAATGACACATTGGTGTCACACAACAAAACATGGGGGTGTATGGGTGCAcgagtgggtgtgttagagaagGTGGGAGTGAAGGTGAGTCCACAATCTGgtgttacacacatacacacatatgcacaacATGTAAGTCACACAGTGTGCTTAGATGAAAGTGTTAATTGACCATTTTGAGGCCTGTCCATCTGACAGATCTTGTCAGCTGAGCACACCATCATTTGTGCCAGGTATCAAGAGATAAATTtacaaggttgccagattggatcaAAAGTTATCAATATGCGGTATGGTTTATTCACTATTAAATCAGGGCTTTCAATTGAACTGCTAATGACACAAAAGCATGAAATGATATGACACGGGTTGCACGTTTCACTGAAGCATCACGGACAAACCAAATCAAAGGATCGAATCACACTGAAAACAGGGCACAGGCAGATCGCACGGCTTTACCTGAGGAGTCAAAACTCTGAGACATGCTAAGCGGCCGAATTACTGCAAGGACAAAACAGTCAGCGGGTTAAAACAGGCAGATTTTCCTGGTATATTAGAAACAGTGGAAAAATCTCTTTCTGATTCCATCTCCGGGGAAATTATGACTAGCTTTTTAAACCTATTTCAGATATCAGATATTCTTTGGTGTCTAGAAGGGTCAGAAAATATGAAATTGCCTTCATGAGCTAACATCAGTAGGTCATTAAAGCTTCAATCTAAACTTCTAAGTGAGCAATGGAAGGacacattgggcctcatttatcaagctgggtaagaagggatttatttgtaattcGTATGACCGTTTACAGAAGAAAtttggtgttcatgaaaatcccataaattcagaaaaacattcGTATCCTAgttgtgctcctgagtgtgtgtgaaattaagcATACAAAGACTAACTGATGTAAACCTCAacttgatcgacttcaaatcatataatttgcatggattactgccaTCAAAAACAATTTGTGAAAACTgtggttttatattattggcattaattaaagaacatgaaaaataaagaaagcgagccaataaattaaaacaaagaaatatatttattcaattatgacaaaagaaatgccagCGCTTTAACGGAGGATgggcctgtctgtctgctaaACGCCTCAGCTGATGGTACATTTAGTCCtcgtttttttattattagtataatATCTTAGTAAACATTTTTactggcatagaagtgagtcaaaataacgcCCATTTCTTTCAGACTTTACCCTGATCGTCcatttcatgctcccagctgtctttgcacttgaccttttatggagttttgtgggcgtcactaaatgcaaatgaactgTGTCAGGAACACACTTTGCATTTCAAGGGTGATCAACATACGCATGCAAGTACAAAGAAATGAGCaattctgaaacttttgtaaatcccgAGGAAAATATTTTGTTCGGTTTGGCtcacgcaaacatttacacacaactttactacaagattgataaatgaggccaacTGATAGCGATTGGAGCAGACTGTCAGTTTAATGCAGCATAGCAATGAAAAGTGAGCTACATGACTCTAATGAACATCTTTAAATCAACAATTTGTGGCTCAATTGTCAATTTAAATGGACTTTAGAAGAATATACAGCAAATTATCATCATAAGATGAATTATCTGTACATGATGTGTGCATGTTATCCAAAGCTCTGTATCAAATcacacactatgcactatactcTGCTGTTGGTAGATAAGGAATCAAAGatttaattaattcttttaTCAAATAGTGACAGTTTTTCATTCATTGAGTCATCGTTTatcccttcttttttttaagttttagtaAATTATTGTACTATTAATAGTACAGTCTGTCACTGATTCTCCAAAATGTGAATGTGGACCAAAAGTGGCTagtgcagtaaaaaaaagtagagGATATGGGACGCCACccaatatgtttgtgtgtacatgtgtgtttgcGGTCTCACCCATCCTGCTCCTGCGAATCTGGTCAGGTGACACTGGGCGGAGCTTCCTCTCCGATTTTATCTCCTCCAGGATCCTTTCATGGAGGCTCGGAGGACGTTCCACCTGAGGCTTCAGCTTACGTGCTGccacctgcaaacacacacacacacacacagtggtgtTGTTCATCTGGGATTGTCATTGGAGTAGCTGAACATGAATAACTAAATAGCTAGCTTCAAAGGTTACcatcactcattcacacatacaataaagtattaaataaaaaaaggtattAAATTATCcagaattaaataaacatcactaaaatgtactgtatgtgtgttttgagtgTATTGATGAAAGTGTGATGGCACTCACAGGATTGAGGGGAGGTCTGGATCGGATGAACTCCAGGATCACCTCATGTGCACTCTTCTTTAACCGAGGAGGAATGTCTCCATTC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU386818 lncRNA upstream 30466 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 36102 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 95146 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 215723 4803837 ~ 4804059 (+) True G326429
XR_003403355.2 lncRNA upstream 216271 4800572 ~ 4803511 (+) True LOC113532560
TU387473 lncRNA downstream 281441 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 511568 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 576080 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 803203 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 812429 5842219 ~ 5842438 (+) True G327391
XM_034297979.1 mRNA upstream 685 5008544 ~ 5019097 (+) True atp6v1c1a
XM_026924263.2 mRNA upstream 30935 4984415 ~ 4988847 (+) True klf10
XM_026924264.2 mRNA upstream 30935 4984416 ~ 4988847 (+) False klf10
XM_026924600.2 mRNA upstream 89627 4924781 ~ 4930155 (+) False srsf10a
XM_026924089.2 mRNA upstream 96111 4921173 ~ 4923671 (+) False fabp10a
XM_034297834.1 mRNA downstream 17176 5046966 ~ 5056667 (+) True cep72
XM_026924631.2 mRNA downstream 67351 5097141 ~ 5105422 (+) True trip13
XM_034298188.1 mRNA downstream 68619 5098409 ~ 5105422 (+) False trip13
XM_034298189.1 mRNA downstream 68794 5098584 ~ 5105422 (+) False trip13
XM_026923906.2 mRNA downstream 81283 5111073 ~ 5140807 (+) True nkd2b
TU386814 other upstream 89628 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 96101 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1006244 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2450043 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 2805521 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 302478 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2872002 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3358397 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3585283 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3738955 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile


TU386838 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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TU386838 Expression in each Bioproject

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TU386838 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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