Item | Value |
---|---|
RNA id | TU386838 |
length | 6545 |
lncRNA type | inter_gene |
GC content | 0.39 |
exon number | 5 |
gene id | G326462 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047616.1 |
NCBI id | CM018562.1 |
chromosome length | 21037487 |
location | 5019782 ~ 5029790 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU386818 | lncRNA | upstream | 30466 | 4985490 ~ 4989316 (+) | False | klf10 |
TU386834 | lncRNA | upstream | 36102 | 4983473 ~ 4983680 (+) | True | G326458 |
TU386812 | lncRNA | upstream | 95146 | 4924178 ~ 4924636 (+) | True | G326440 |
TU386800 | lncRNA | upstream | 215723 | 4803837 ~ 4804059 (+) | True | G326429 |
XR_003403355.2 | lncRNA | upstream | 216271 | 4800572 ~ 4803511 (+) | True | LOC113532560 |
TU387473 | lncRNA | downstream | 281441 | 5311231 ~ 5314589 (+) | False | acbd7 |
TU387573 | lncRNA | downstream | 511568 | 5541358 ~ 5541889 (+) | True | G327071 |
TU387696 | lncRNA | downstream | 576080 | 5605870 ~ 5607099 (+) | True | G327178 |
TU387921 | lncRNA | downstream | 803203 | 5832993 ~ 5833262 (+) | True | G327385 |
TU387927 | lncRNA | downstream | 812429 | 5842219 ~ 5842438 (+) | True | G327391 |
XM_034297979.1 | mRNA | upstream | 685 | 5008544 ~ 5019097 (+) | True | atp6v1c1a |
XM_026924263.2 | mRNA | upstream | 30935 | 4984415 ~ 4988847 (+) | True | klf10 |
XM_026924264.2 | mRNA | upstream | 30935 | 4984416 ~ 4988847 (+) | False | klf10 |
XM_026924600.2 | mRNA | upstream | 89627 | 4924781 ~ 4930155 (+) | False | srsf10a |
XM_026924089.2 | mRNA | upstream | 96111 | 4921173 ~ 4923671 (+) | False | fabp10a |
XM_034297834.1 | mRNA | downstream | 17176 | 5046966 ~ 5056667 (+) | True | cep72 |
XM_026924631.2 | mRNA | downstream | 67351 | 5097141 ~ 5105422 (+) | True | trip13 |
XM_034298188.1 | mRNA | downstream | 68619 | 5098409 ~ 5105422 (+) | False | trip13 |
XM_034298189.1 | mRNA | downstream | 68794 | 5098584 ~ 5105422 (+) | False | trip13 |
XM_026923906.2 | mRNA | downstream | 81283 | 5111073 ~ 5140807 (+) | True | nkd2b |
TU386814 | other | upstream | 89628 | 4924786 ~ 4930154 (+) | True | srsf10a |
TU386810 | other | upstream | 96101 | 4920980 ~ 4923681 (+) | True | fabp10a |
TU386582 | other | upstream | 1006244 | 4011410 ~ 4013538 (+) | False | hamp |
TU385671 | other | upstream | 2450043 | 2565700 ~ 2569739 (+) | False | G325435 |
XR_003403390.2 | other | upstream | 2805521 | 2210222 ~ 2214261 (+) | False | LOC113533074 |
TU387482 | other | downstream | 302478 | 5332268 ~ 5338251 (+) | True | G326997 |
TU389428 | other | downstream | 2872002 | 7901792 ~ 7902608 (+) | False | LOC113532663 |
XR_004576973.1 | other | downstream | 3358397 | 8388187 ~ 8484833 (+) | False | LOC113532774 |
TU389909 | other | downstream | 3585283 | 8615073 ~ 8665836 (+) | False | G329111 |
XR_004576949.1 | other | downstream | 3738955 | 8768745 ~ 8815560 (+) | False | LOC113532648 |