RNA id: XM_034297938.1


Basic Information

Item Value
RNA id XM_034297938.1
length 10103
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC113532858
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4308606 ~ 4347253 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAggcgagcgagcgagcgagcggTGGAGAACCGGGCTGGAAACGCGACAAAACGGGTTCTGGACTTGACATTTTGACAGCGCTTAAGGACGAGATAAAGTGTCGGAAAAACAACAACCCGAGTCATTTTACAGCTGTTTGGTTTGTTGAGAAGAGTCGCTTTTCGGATGGGAATTTCGGCTAAGCGAGCGAGCAAGCAGGCTGGCTAGCTAAGTTAGCATGGCACCCAGCTAGCTAAACTTTTAGCTACTTCGCGAGCGCAGATGCGAGTCATTCTTGTCAcgagcaaaaaaataaataaataaaaatgtttcgCTGTATTTGTTCTTCTGGGTAGTTGAGTGGAATTTCTGGACGTTAGACTATCCTTTAACAAGCTGCCGTGTACTGTTAGCTAGCTCCGTCGTTCTGTCAGGGCAAGCGGTGAAGAGTGACCGCGAGTCCGTGGTTGAGTCGCGGGGAGACGGAAGAGCCCGTGAAGCCCGGGGCGGCCCATCTCGCCCCGCGAGTAACGCCATTTCTAACCGCATATCTGGACGAGAATCTTTACAAATAGCACATTTGGGTTGTATCTGGGATTttcattggattttttttctcggAAAGCCGgagttttcttcttctgtgagCCGGGGAAGGAACCGGACAGAGAGCCTCATGAATGGAAATCGGAACTTCAGGAGTCGTTGGGGCCCAGTCCCTGTTCTCCATGCCCCGGAGGCCTGGCTATGGCACCATGGGGAAGCCCATCAAGCTGCTGGCCAACTGCTTCCAGGTGGAGATCCCCAAGATGGACGTCTACCTCTACGAGGTGGACATTAAACCTGAGAAGTGCCCACGCAGAGTCAACagAGAGGTGGTGGACTCCATGGTGCAGCACTTTAAGGTGACCATCTTCGGGGATCGCCGGCCAGTCTACGATGGAAAGAGAAGCCTTTACACAGCAAACCCACTTCCTGTGGCCCCCACAGGGGTGGATCTGGACGTCACGCTGCCAGGAGAAGGGGGCAAAGACAGGCCATTTAAAGTCACCATTAAGTTTGTGTCGCTGGTCAGTTGGCACCTGCTGCATGAGGTACTGACTGGACGCAGCATGCCCGAGCCCCTTGAGCTGGACAAGCCCATCAGCACCAACCCGGTGCATGCCGTGGACGTGGTGCTCAGACATCTGCCCTCCATGAAATACACTCCAGTGGGCCGCTCGTTCTTCTCCGCTCCGGAGGGCTATGACCATCCTctgggaggaggaagagaggtcTGGTTCGGCTTCCATCAGTCCGTTCGACCCGCTATGTGGAAGATGATGCTCAACATTGATGTGTCAGCCACGGCCTTTTACAAAGCACAGCCAGTCATCCAGTTCATGTGTGAGGTCCTGGACATCCACAACATTGACGAGCAGCCCCGCCCCCTCACCGATTCGCACCGAGTCAAGTTCACCAAAGAAATCAAAGGTCTTAAGGTGGAGGTGACGCACTGTGGAACCATGCGGAGGAAGTACCGAGTGTGTAATGTGACTCGCCGACCTGCCAGCCATCAAACGTTCCCCTTGCAGTTGGAAAATGGACAAACGGTGGAAAGGACCGTTGCTCAGTATTTTCGAGAAAAGTACAACCTGCAGCTGAAGTACCCACACCTGCCGTGTCTGCAGGTCGGCCAGGAGCAGAAACACACCTACCTGCCCCTGGAGgtGTGTAACATCGTAGCAGGGCAGCGATGCATCAAGAAACTGACTGATAATCAGACGTCCACTATGATCAAAGCCACAGCGCGCTCAGCACCGGACCGACAGGAGGAGATCAGCAGACTGGTACGCAGTGCCAACTATGAGGCCGATCCGTTTGTGCAGGAGTTCCAGTTCAAGGTTCGGGACGAGATGGCTCACGTGACGGGCCGTGTGTTGCCCGCGCCCATGCTGCAGTACGGGGGCAGGGTGAGCTCAGAGAACTTTCTGAACCGGACCGTGGCCACGCCCAGTCACGGTGTGTGGGACATGCGGGGAAAGCAGTTTCACACTGGTGTAGAGATCAAGATGTGGGCCATCGCATGCTTTGCCACACAGAGGCAGTGCCGCGAGGAGATCCTTAAGGGGTTCACAGATCAGCTGCGCAAGATCTCGAAGGATGCCGGGATGCCCATCCAGGGCCAGCCGTGTTTCTGTAAGTACGCGCAGGGAGCCGACAGCGTGGAGCCCATGTTCAGACACCTTAAGAACACCTACTCCGGCCTGCAGCTCATCATCGTCATCCTGCCTGGGAAAACTCCTGTCTATGcGGAGGTGAAGCGTGTAGGAGACACTCTTCTAGGAATGGCCActcagtgtgtgcaggtgaagAACGTGGTGAAGACATCACCGCAGACGCTCTCCAACCTCTGCCTCAAGATCAACGTCAAACTCGGCGGCATCAACAACATCCTGGTACCACATCAAcgGCCATCAGTGTTCCAGCAGCCTGTGATCTTCCTGGGTGCAGATGTCACACACCCTCCTGCTGGGGACGGGAAAAAGCCGTCCATCGCTGCGGTGGTAGGCAGTATGGATGCCCACCCCAGTCGGTACTGTGCCACTGTGCGGGTGCAGAGGCCGCGGCAGGAAGTGATTCAGGACTTGGCCTCCATGGTACGTGAGCTCCTCATCCAGTTCTATAAGTCCACTCGATACAAACCCACCCGGATCATCTTCTACAGGGACGGTGTGTCCGAGGGCCAGTTCAGACAGGTGCTGTATTATGAACTGCTGGCTATCAGGGAGGCCTGCATTAGCTTGGAGAAAGAGTACCAGCCTGGCATCACCTACATTGTGGTGCAGAAACGCCACCACACCCGCCTGTTCTGCGCTGACCGCAATGAGAGGGTGGGCCGCAGCGGAAACATTCCTGCTGGTACGACTGTCGACACAGACATCACACACCCTTACGAGTTTGACTTTTACCTCTGCAGCCATGCTGGAATACAGGGCACAAGCCGCCCCTCTCACTACCATGTGCTGTGGGACGACAACTGCTTCACAGCCGACGAGTTCCAGCTGCTCACCTACCAGCTGTGCCACACGTATGTGCGCTGCACACGCTCTGTCTCCATCCCCGCACCTGCCTACTACGCCCACCTGGTGGCCTTCCGTGCCCGCTACCACCTGGTGGATAAAGAGCATGACAGTGCCGAGGGAAGCCACGTCTCTGGTCAGAGTAATGGCCGAGACCCCCAGGCTCTGGCCAAAGCTGTGCAGATTCACCATGACACCCTGAGGACCATGTACTTCGCCTGAGAGCCCTGATTCATCCCACTCGCTCGCCCACACACCTCCTCCTAAATGCGGACCGGACACTGTGCGGCAGGAAGCGGGGGGGTGGGGGGTTCATGGGGGTCTCGCCAATCCCAAATCCGGCCTGAGAGTGCACACCTGCTTTAATCCCACACCCAAAACTGAGCACTGTTATGCAATATTAAACCAGCCAACCAcgttttcttatttattttggagGAAGGTGACCCTTGCACCAAACAAAAGGGAGTTTCCCCCCCCGTCTGTCTGCTTGATTTGTTTACCTCAAGGTTGTAACAGCAGCACTTTGACCGCCCAGTTTTTGCAGAATGACACTCCAGGAAAGCTGAAAGGAGTTAGGAAAGGGACGAGTTTGTCTTCTGCTAGATCAACGAGTGTCAGTTGTTATGAATTATACTTTAGGAATATCTCAAAAATTCACACACAAGCTCTAATTATAAGTGCCACCCATTAGGGCCAGATGATAttacaaactgcttttttttttttttttccttttccatagAGCTTCATTTGTTTCCCTCAAGCTTCGTGCCGAGTTAGTCCTCCCATGGTGGTCCTGCTCACTGAGCTTTCATTTACTACAATGCAAAGTGatcttatttttaatgtttatgtgtataaaattgtaggtttttttttttttttggttttgtttttaattgctcccagtatttattttcctgttttagatgattttagattttttttttcccagcattcTCTTTTctcccttctttttttctttctcttgttttaAAAACCAAGTAGAGGCCATGTTATAGGACAGATTGTGATATTCCGGTTTTAGTGCAATAATGGATCAGCGCCTATGTAGAGTACAGCTTTCTGGATCATGTGAGAATGGAACAGGGATAAGGATGTGAGGATAATGATAGCAACCCAGCGCTCTGTATGTGAATAGGAGTTGGAGGGTTGTAGAATATAAGGTGGAAACGTGTATGTTTGGCGCTTTTACAGTTGCATGCGcatattcaaaaaaatatatataataggTAATAAATTAGTAGATCTCTTTGATGAGGGTTCAAAATCAAGTGCCTGGTTTTAGAAAAGGAATATTTTctagaaggtttttttttgttaatgaaagATTTTAAGAAAATGGTTAATGCAGTGCATTAAGATGCCCAAGAGTGCAGTTTTGCTGGagttgtgatttttaaaaaggcttCGAGGTCACAACTTTATTGGATTGCAGAAAGCCATGATCTGTTCTTAACTTCTGTTTTGCGATGGAATGACGTTAAGAATTTCTTTCACTGATCAGTATTGTGTGGCCTTTAGGTCATCTTTGGATTCAGTACGAGTCCTTCATAGCCGTGTAACTCTCCCAGCTTTTTATCCTACACAGCAGAAACTTATCCCATCGTCTGCCACTTCTGATCAGGATCTAGCTGCTATTATACAGGTTCCTTTGACGAGACTGACGGTGTGCTTCAGGTTCATTCAAGGACGAAAGAGAGTGAGGTGATGCAGCagcacatggtgtgtgtgtgcacgcttgtTCACCAGAGGGCCAGTAGAGGGCAGTGTGGAGTTTTACTTGCAGGCTCTCTTGCTCCTTCTGAAGCACGTCCCGTTTTGTAAGCGAGGGGACAGTAACCTGCACtaattaaagctgaataaaGCTTGGTGCTATACTGTGCGTCGTTTATGGCGCACACTACAGAGATTTTGATGTGAGGGTGGGAACATGGAGTGTGCAAATGGTGCTGGCTACATATCTCTTTTTGTTGGAACAGACATTTGGGTTGTGTTTGATTAGGTGTGCTGAAGAGGACAGCTGTGGTACCTATGACGCCTAAACCTCAAACCAGTTCATGTCATGCTAAATGGTCCCTGATGGCATCTATCACTTTAATAACTTACTGGAAAAATCCGACTTCCTTTCCAATCCAGAGTTGACgtatttataactttttttgtttttaaattatttcatagACAAAAATGTAGTTTTACTGACTTTATGTTACTAAATACTATAGACAGCGGTAATGGTGCAAGATTATGTTATGTAGAGACTGTGCTTTAAGGCTGTACTTTGTGTCTGAAGCATCTTCTGAGCAGAGATATTAGTGCATGTGCTAAAGTTGAACATCACAGTGAGCTTGAATGCATCACCATCTAATCAGGTgatacagtgtagtgtataaaGTTTGTACCaatcctgtttctcatttttaaaacaatacgAATATTCTAGTACTAGTAGTACCAATACCAAGGAACAAAGCCTGCTCATTGCAAGCTTCTGTCACCAGTTTATATAAATCATCACAAGCATGTTGGTGTGCTTTAGGACAGTTTATGTCCTATGGTAATGTGCAAGATCTGTGTTGTATATTTTAACACCACATGTTCACAACATAAAAGACATCACTGAATCGGATAATCTGTAAGTTAAAACCTGATCCAGTGCTGATATCGATACTGTGATGAGTATGTCTTTAAATAATGGAACCACTATCGGAGTTAGTATGGTTGATCATCAGTTTTGACCCACCATGACAGTGTAGAGTATTTATAAATTCTTGTTTAAGGAAGGTTCTGGTAGCAGATGTTGTGAATAAAGCTGTGTAGCATGTTGGACCGGATGGTGCTTAGTGTGTAGCAGTTGTATTTTGCCTCATGAGTATTCTCAGCTTCACATAATTTTTGTTCAGCACAGTGGCTGACGTTTTGCTATCCTTTCATGAGGACTGAAGTCGACTCGAACCGCAATCGAACCGAAACTCCTAGGCCTTCCccttttcagtgttcagtgtaaaACGTGTGGAGCCAAAAGAGGTTAAAGTCCTTAGAAAGTGCCTTTCCTCATGACGGTGCTGAAGAATCCGAATTTAAGTGACAGATCAAACAGTTTTCTTTATCTTACCTTGCACACATGCAGACGCATGCACAAGCTTACATTCAGACATTTTTCATCTAAAGAACGAGGCTTGGTGAAGTCTCTGTGTATATTCAGTTATAACGTTGATAATATATGCCAagtataacaaaaaaatgtatatgattGAGCTCTGGGTTTTGTGTCAGGACCAGCGGGGAAGGTGTTCAGGGGGAATTGGTACACAGCCTGACATGGAGAGAAAAGCCTAGCACTGCACTTTAAAGACTGCCACCCAAACCGGAAGTAAAGACTGATTTTCTTTCTGATTGTttggggtttttgttttttatcttcTAAGCATGTAGGCATGTGCCGGACAAAAGATCAGACTATCCCGGCATCCCATTTAGGAGGATGTTGCCTAGATAGGTGGCTTTTATGGGCAGTGTTTGCACTCTGAAGGTAGTGCAGTCTCACTATTTAATGCCTGaaattagccccgcccccaggtGGAACAAGACTGTTCAGTAGCTCCTTATAAATACTCCTGAAATGTGTGTAGTTTAAGAGAAATTTAAGACATCTCCCAAAGCAGCTCTTAATTACAATTTTATCTGATAAGTCGTGATGAAACATTAGACAGAAATTTAAGAATTTaatatcggcacatgcctaTTCGACAGTCGAGATTTAAGTTTGGCTCCCCGCTGGTTTGAGGTCATTTCAGGTGGCTTTGTCACCACTCGTGCAATGCCCTATAGAGAGTACTTACAAATATCATGAGTCTATTTTATTACCTTCACTTTTGACCTGGAGTATTAGGGTCAAGAATTAGAGACCCCTCAGGCGCTTGTCGGTCACATGGGTGCCCGTCGGTCCAGGAGGAAATACCTCTTACAAGAGATCTCGAAACACTGCACCTCACTGACCTTGGTATGCTGCAAATGTTCAAGTAAACGAGTTAAACTGCAAACATTGCTTTGATTACAGTATCAGTGCTAGATTTAATGCCTGACAACATTTATCCTTAACTATTTGAGTAGATTGTAagaagtgggtttttttttgtgtgtgagtgtctctTTAACacttctttctgtttattgagccaacttttcatttttgtcttatttaatttttttttcttttaatatattcGAAATATATATGCGAAATATTTTATGGTGTATTTATTAAAAGCGTTCTAAAGTGCGGCTGGAGTGTCCGCATAGTAGGCAGCATTACAGAGGGGGGAAGGAGGGGCAGCAAGAGGGCGCCACATCCCAAACAAGCAGTCCTCACTCTTGTGTTAGACGAGAGCCCTTCAGATCCAGTGCTGAAGAGccgatttctttttaaaaccagTCTCCCAGAATCGTCTGGTTTCCCTGATTAGTGCTGGGATGGAATCCTGTGCACAGTTTGACATTTTGGAAAGTTGAAGAATGTTAGTCAGGTTGAATCAGAAgtgtgctgataatcagttgTACAATATATCATGACACTCAGCACTTTAGTGTTATCATCATGGAcagatgaaaaatatcattacccctgtgttatatatgtttgtgCTTCATTCAGAAGGCTTCCTCATTTTGGACAAAAATGACCCGCATGGAGAAGGCAATCCCACAATTCTGTTCACCATgggttttaaaagaaataaacacttttatttacagtaatacagtTTGCAAACCTAAATTCAGCACGTCTAATTATTGAGAGATGTTATCAGGACTGGATCTTCAACAACGCTAAGCAATCTTTAAACACAGTGAGGGTGACTGCGAACATGATGTTGTATTAAGGCACAACATAGTATCTTCAAGAAATTATTCTCCCTTGGCATATTCTTAGGCATGACGtggagcagagttactgttaccacctataacaacacatcctgaattgttttatccctcttataccacagcgaatTGCAAACTATTACAATGTTTCtacattacaatttattaaagagagacatgtcatatttttttaatccatttatagttacacgtAATGTCAAATGTCTGCTtaaatttagttcctgttaccacttgcATTCTAAAACCTAAAAACAGTCGTACTGTCAccaccctttcttttttttctcctataaaattagcaagacaaaaaaatgcagcttgtcatattactgagaaaccaaaaGCACAAACTCATGTATCTCCTTTGTCGGAGAacttgctgactgttacaaaggagctgacactgaagacttcttccataaatgttgaataaacgtctcctaacagaaacTTCTATGATTTTGCTGTAGAAATGAGACCGTTGCTGTAGAAGTGATAACGTTAGAATGGGTGCATtgttataaacctgtgatttgaattgtaGCCAGCgttactgtcaaagctgctgttgtaaaaaaaataaaatttaatcaacactttttgattaatcagatttgagaattaagCAGCGCTGTAGTATAAATAGTATAAATCCAATATTAAAATCTTCTATCACAATAATCACTTAATAAACTTTTATCGTTGTTTACGATgatatttttaatcacattagACTGGAAATCATTTCTCAGTCAGAGCGAATGTTCTGTCTGCCATGTTTTTTAGTGGAGCTCTTATTTGTTGAACAGAATCATGGGATTGCCTTCTTGTTCAAAATAAGGACCTGTCCCCATGCTACCTTCTGAATAAGACAGACCTCTTAGAGAGCCTTATCAGAATAGAGAGTgatgagaatttaaaatgatatgCTTATTGCAGTATATCGTGTAATTGATTATTGGTGCATGCCTGCTAGGTGTTAATGACAAACTTGACACTACGTGTAGAGGAATAGAAGGGGAGCTGCTCCATCCCAAACCCCTCCAAATGCTGCTTATTTTCTGTTTAGGGGACAGAGAACCACACTgacaatacaataaacaaagCTGACGTGTTTCAAATCCAGAGCTGCTAAACTCCAGCCATAGAAGTTCCCCTGCGTTTGGGGTGGGAAGTTGGTAGTCGCGTGCTCAAGTTGAGTCGTCTTTTGTGCCAGAGCCATTTAAGGAGAGAGCAGGAAGTAAAACGAGTCCCATTCCTCTCGGATGACATGAGCCTCAGCCTTAACTGTTGTCGGAGTTTttgatttctgtttattaaatgCCTTAGTTTGTATAGAGAAGTATGCTAACTTGCAGTTGCGTCTTATAAACCACTAACTGTGCAAATCCCCACGTGTGAAAATGTACTACTCGTCCAGCGTACGGCTCCTCCAGTCCAGCACGATTAAGACAGTCACACTCTGACGGCCACAGCTCGTACCACCGTCTCGTCATCAGTCGCAGGTCTCGTCTTCGGCCATTAGTTAATTTAATGAAGGGGGACAGAAACATGCAGCTCCAGTGGAGTTCATGCATGAAGAGTAACGCACATGCACAACTGTTCCTGAACTTGTGGATTGTTTACAAACAGTTGTTTACTGAAAACGTCAAGCTCCAGCATTCCAAATGACGACTGTAGATGCTGTATAGTGTCTCAATTTAgcagatcaaaaaaaaaaaaaaaaaaaagttcctttaAATTTCTCTAAATGCATTATTTAGAGATGATCTTTCTTGTCCATCCACGGCACAGGACGCTGAACTCCACGACATCTTCAAACAGTAAAGTTTATCCCTAGAGGAACCAAAGTATGCACTCTTTCAGCTAAGTGTCCTTCAGGACTGTCCTTCCGCTCGGGGGTCTCAAGGACGTTCTTCATGAATGTTTCATGTCCAGGAGCTCCATgactctgtctccctctctttctctctctgtgtcgcTACACCAAGGGGtcttttattttacctttaaaaGTATTTCTTATGTATGTTTTGTAACTCTTTCTCTGATGGCCTTTTAGTGTTGCTTTGCCTTAGACTGAAGTGTATCTTTCACTACTAATTGCAATAAAAAAGCTTTGCTTTTAA

Function

GO:

id name namespace
GO:0072091 regulation of stem cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0035198 miRNA binding molecular_function

KEGG:

id description
K11593 ELF2C, AGO; eukaryotic translation initiation factor 2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386940 lncRNA downstream 114359 4192950 ~ 4194247 (-) True G326557
TU386871 lncRNA downstream 231638 4061916 ~ 4076968 (-) True G326488
TU386581 lncRNA downstream 306781 4001618 ~ 4001825 (-) True G326236
TU386580 lncRNA downstream 307091 3999109 ~ 4001515 (-) True G326235
TU386553 lncRNA downstream 349611 3957503 ~ 3958995 (-) False vsig10l
TU386991 lncRNA upstream 37822 4385075 ~ 4394774 (-) True G326597
TU386989 lncRNA upstream 44297 4391550 ~ 4394774 (-) False G326597
TU386990 lncRNA upstream 44297 4391550 ~ 4394774 (-) False G326597
XR_003403377.2 lncRNA upstream 61238 4408491 ~ 4411401 (-) True LOC113532978
TU387029 lncRNA upstream 154336 4501589 ~ 4502601 (-) True G326630
XM_026923879.2 mRNA downstream 34793 4261821 ~ 4273813 (-) False si:dkeyp-97a10.3
XM_026923878.2 mRNA downstream 34793 4261821 ~ 4273813 (-) True si:dkeyp-97a10.3
XM_026924012.2 mRNA downstream 51634 4250942 ~ 4256972 (-) True LOC113532587
XM_026924694.2 mRNA downstream 63746 4242354 ~ 4244860 (-) True LOC113532948
XM_026924693.2 mRNA downstream 74619 4225960 ~ 4233987 (-) True LOC113532947
XM_026924675.2 mRNA upstream 3465 4350718 ~ 4374894 (-) True ago1
XM_026924013.2 mRNA upstream 103097 4450350 ~ 4466446 (-) True si:ch211-107n13.1
XM_034297818.1 mRNA upstream 103097 4450350 ~ 4455607 (-) False si:ch211-107n13.1
XM_026923970.2 mRNA upstream 584902 4932155 ~ 4977489 (-) True ubr5
XM_026924262.2 mRNA upstream 640420 4987673 ~ 5001824 (-) False azin1a
TU386070 other downstream 1069459 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 2211171 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 2857890 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 2937577 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 3206489 1047583 ~ 1102117 (-) True nek11
TU387191 other upstream 616364 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 616364 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 1482221 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 1528843 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 2082607 6429860 ~ 6429932 (-) True trnam-cau_47

Expression Profile