RNA id: TU387308


Basic Information

Item Value
RNA id TU387308
length 1112
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G326875
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5104832 ~ 5105966 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATCTTAATaagaacatggaaaaaaaaaaaaaaagctcaaagtATCAGTAGGaactgggcgatatgacaaaatattataTCACGATTCTTGAAGGCTCAACTACTATGcacgatatgtatcatgatatagaggtttgccaacaatttcaattaaaaaactGTTCATGACActatatttaatgtctacaaaaaatattagtttttgcagaaataaaaatgcaacttttttaaaataaaaaaataaccctgaaaagaagaaaaacatcatttacaatttaaaaaattaacaaaattttaacatcacatcCACTGCTTAAATTtgtccatttttaaattaaataaacaaacaaaaaaaaagatatcacaatttCCATGATACCTCAGAAAAGCATACAGTGGCATAATTTATCATGCTATCGATATTATTATCGTCGTACTGCCCAGCCCTAGTGTCAATAATTCGTAGTGTTAATGCAGATTTTTAATACGCCATCTAGTGGTGATATGTCGGCCCAAGAAATTTTGTTTCAGCACATTTTAAtcaagaaatgtttttttaaatacacacataaaatcacaacaaacatttttctgtttgcGCACAACTAAAAGTGTTCATATGTGTCCATTATGGCACGTGTTTCTTTGTAGACAGATTCCTAAATGCATCGTAACACAAATTCCACACTGAGGCTGGTGGGGAACCTGGAGCTTGAAGGATGAAGAGCCATATTTTAGTTACATGCTGATAACATAACACAAGACAAACCAGACTAACAGACGAACACAACTTTGTCAGGAAAAACTTGTAAAAagaacaggggaaaaaaaaacttgtcacaGTCTTATAAAAAATTCTGCTCATAAAGTGCTCTTCAGAAAAAAGTCAACACAAGAAAGCTGCAACTAGTGGCATCAGCTCTGAGTCATTAAAGTTCAGTAAATAACAACAGCTAGAATCAGTAATGGACAGAACAGTGACAGATTAGATGGTAACCTTTCGCCACCAGCTTACACTCATATACAGTTAACCAGCTTCTCCCGTTCCTTTATCTGATGAGCCACAGCCTTGTCCATAGCACTCAGAAAGCGCTCGACCGTCATCATAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387253 lncRNA downstream 136285 4967298 ~ 4968547 (-) True G326830
TU387029 lncRNA downstream 602231 4501589 ~ 4502601 (-) True G326630
XR_003403377.2 lncRNA downstream 693431 4408491 ~ 4411401 (-) True LOC113532978
TU386991 lncRNA downstream 710058 4385075 ~ 4394774 (-) True G326597
TU387406 lncRNA upstream 74850 5180816 ~ 5181017 (-) True G326940
TU387411 lncRNA upstream 92257 5198223 ~ 5199406 (-) True G326945
TU387426 lncRNA upstream 149829 5255795 ~ 5256011 (-) True G326958
TU387428 lncRNA upstream 151085 5257051 ~ 5257276 (-) True G326960
TU387455 lncRNA upstream 188766 5294732 ~ 5295232 (-) True G326981
XM_034298187.1 mRNA downstream 7646 5085898 ~ 5097186 (-) False brd9
XM_034298186.1 mRNA downstream 7646 5085898 ~ 5097186 (-) False brd9
XM_026924938.2 mRNA downstream 7648 5085898 ~ 5097184 (-) False brd9
XM_026924936.2 mRNA downstream 7648 5085898 ~ 5097184 (-) True brd9
XM_026924937.2 mRNA downstream 7649 5085898 ~ 5097183 (-) False brd9
XM_034297835.1 mRNA upstream 61130 5167096 ~ 5168626 (-) True LOC117595761
XM_034297836.1 mRNA upstream 72316 5178282 ~ 5179018 (-) True LOC117595762
XM_026924952.2 mRNA upstream 99595 5205561 ~ 5216300 (-) True si:dkey-65b12.6
XM_034298072.1 mRNA upstream 201475 5307441 ~ 5309104 (-) False rpp38
XM_026924203.2 mRNA upstream 201475 5307441 ~ 5309104 (-) True rpp38
TU387192 other downstream 127305 4963617 ~ 4977527 (-) False ubr5
TU387191 other downstream 127379 4963617 ~ 4977453 (-) False ubr5
TU386070 other downstream 1865685 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 3007397 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 3654116 1429932 ~ 1450716 (-) False kif13a
XR_003403372.2 other upstream 723508 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 770130 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 1323894 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 1950828 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 2272814 7378780 ~ 7386306 (-) False sec61b

Expression Profile