RNA id: TU387426


Basic Information

Item Value
RNA id TU387426
length 217
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G326958
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5255795 ~ 5256011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtctCCGGTCGCTTTGTTGCTGTGAGTCACTGCATGTGTGAATGTAGCTTTATAGTTATTGACCTATTTGATGTCAAATAGTGGTGGAGACAGATTTAATTTCATAAgaggcaaacaaaacaaacaaagtcaaaacaagattaataaaatgagcaaaacaagAACTAGAAGAACACGGCATGAAACGCCCAACAGGTTTCATACAACAGAAGCTTAG

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387411 lncRNA downstream 56389 5198223 ~ 5199406 (-) True G326945
TU387406 lncRNA downstream 74778 5180816 ~ 5181017 (-) True G326940
TU387308 lncRNA downstream 149829 5104832 ~ 5105966 (-) True G326875
TU387253 lncRNA downstream 287248 4967298 ~ 4968547 (-) True G326830
TU387029 lncRNA downstream 753194 4501589 ~ 4502601 (-) True G326630
TU387428 lncRNA upstream 1040 5257051 ~ 5257276 (-) True G326960
TU387455 lncRNA upstream 38721 5294732 ~ 5295232 (-) True G326981
TU387472 lncRNA upstream 54038 5310049 ~ 5310265 (-) True G326989
TU387478 lncRNA upstream 58196 5314207 ~ 5314655 (-) True G326995
TU387604 lncRNA upstream 136211 5392222 ~ 5393582 (-) True G327100
XM_026924952.2 mRNA downstream 39495 5205561 ~ 5216300 (-) True si:dkey-65b12.6
XM_034297836.1 mRNA downstream 76777 5178282 ~ 5179018 (-) True LOC117595762
XM_034297835.1 mRNA downstream 87169 5167096 ~ 5168626 (-) True LOC117595761
XM_026924938.2 mRNA downstream 158611 5085898 ~ 5097184 (-) False brd9
XM_034298072.1 mRNA upstream 51430 5307441 ~ 5309104 (-) False rpp38
XM_026924203.2 mRNA upstream 51430 5307441 ~ 5309104 (-) True rpp38
XM_026924200.2 mRNA upstream 76118 5332129 ~ 5349833 (-) True abcb4
XM_026924201.2 mRNA upstream 76118 5332129 ~ 5345883 (-) False abcb4
XM_034298176.1 mRNA upstream 135406 5391417 ~ 5400856 (-) False slc25a40
TU387192 other downstream 278268 4963617 ~ 4977527 (-) False ubr5
TU387191 other downstream 278342 4963617 ~ 4977453 (-) False ubr5
TU386070 other downstream 2016648 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 3158360 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 3805079 1429932 ~ 1450716 (-) False kif13a
XR_003403372.2 other upstream 573463 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 620085 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 1173849 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 1800783 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 2122769 7378780 ~ 7386306 (-) False sec61b

Expression Profile