RNA id: XM_026924204.2



Basic Information


Item Value
RNA id XM_026924204.2
length 595
RNA type mRNA
GC content 0.43
exon number 4
gene id acbd7
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5311209 ~ 5314614 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ctcagccaatcagcgcTCGCGCGCTCGCTCACACTCTAGCTCGCGACAGCTCGGCTCGAGCGCACTGTAATTCGTGAGCAGATCTGCGCGCGCACAGAGCGATAAACAAACAGCTGACTGAGAAAATGCTGCAGgcagaGTTTGAGAAGATTGCAGCGGATGTAAAACAGGTGAAGACTAGGCCATCTGATCAGGAGCTACTGGATCTGTATGGTCTCTACAAGCAGGCTATTGCTGGGGACATTAACATCGATGCACCTGGAATGTTGGATAtgaaagcaaaagcaaaatggGATGCTTGGAATTCCAGGAAAGGCATGTCCACAGAAGATGCCATGACTGCCTACATCACCCTGGCCAAGGAAGTCATCAATAAATATGGAATGTGATGAATTTTTATCACTGGATTAGATTTACATGTGAGCCCAAAAATAGTGGATATGATATTGCTCAGATAGATTAAACAGTTATTGTTAATGTTACACTAATTATCTGTTGTGGTTCTgaattttaacagtgtaatagTTACTGTAAGGGCTAAGGATAATGCTATTATTTTTGCAACAGgttgaaaacattaaaaacattgttgtga

Function


GO:

id name namespace
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU386838 lncRNA upstream 281419 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 321893 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 327529 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 386573 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 507150 4803837 ~ 4804059 (+) True G326429
TU387573 lncRNA downstream 226744 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 291256 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 518379 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 527605 5842219 ~ 5842438 (+) True G327391
TU388624 lncRNA downstream 1333666 6648280 ~ 6708779 (+) True G328024
XM_026924202.2 mRNA upstream 4070 5298302 ~ 5307139 (+) True nmt2
XM_026924452.2 mRNA upstream 16466 5260438 ~ 5294743 (+) True fam171a1
XM_026924393.2 mRNA upstream 52650 5254686 ~ 5258559 (+) True LOC113532775
XM_034298250.1 mRNA upstream 56657 5248910 ~ 5254552 (+) False LOC113532776
XM_034298071.1 mRNA downstream 2584 5317198 ~ 5331214 (+) True crot
XM_026923889.2 mRNA downstream 41568 5356182 ~ 5386626 (+) False rundc3b
XM_026923887.2 mRNA downstream 41570 5356184 ~ 5386626 (+) True rundc3b
XM_026923890.2 mRNA downstream 41570 5356184 ~ 5386626 (+) False rundc3b
XM_026923888.2 mRNA downstream 41573 5356187 ~ 5386626 (+) False rundc3b
TU386814 other upstream 381055 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 387528 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1297671 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2741470 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 3096948 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 17654 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2587178 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3073573 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3300459 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3454131 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile