RNA id: TU387482


Basic Information

Item Value
RNA id TU387482
length 1477
RNA type TUCP
GC content 0.40
exon number 3
gene id G326997
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5332268 ~ 5338251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttatttttgaaaacctgttttctttataaaccttccttaatttaaataaatatgtattagtCATAATTACATACATTCAAACTTGCCAAACACAAAGTAGCCAATGATTCTTATTACTTCTGTGGCACATTTTGGCTCGCTGTAAATCAGACTCCATATCTCTCCCTGTCATTATGATTGGAAGTGTGTGgctaaattgttattttaataaatgcgTTTAGTTGTATTATGGATTGTAACTGATTATGAAGCTGAACTGAGTGAGTGAAATAGTTAAATAAACTTACAGATTAGAAGTGAGTACATGTCCAGCAGACAGAGGTTATTTTAAAAGTACTAACATCTTCAGTAGTCTTCTGTCCATGTCACTTTTCTTACTGTGACCATGGTTTTTCCTCTACCACATCTATTAcagcttttaaatattaaatcttaCGACCTCATCTAAATCCTGTCTTACATAACAGATCATCTCAAATGTTATGATCAACCCCATTCCTCTTTGCAGTAAAGTTAAATTTCCATACTGCATAAAACATCCTGATTCCCTGTCATTCTTCTCAAGTAGTTGCCTATTTGCTGTAACCCATTTGGGAATTGACGAGGGTGTAGTAAACCCCCTGCTGGCTGAggagctgtttgtgtgtgcccTGCTCCACCACCACACCATTCTGAAACACAGCAATAACATCAGCATTCTTGATGGTGGACAGCCGGTGAGCCACTATGATGCAGGGGATCGTAAAATCTCTCCAGCAGCTGTATGGTGGTACTCTTGCCACAGCCGCTGCTGCCCACCAGAGCAAGGGTCTGACCCTTCTTCACTCTGAGCCGCAGGCCCTGCAGTACAGGCACGTCTGGCCGTGACGGATATCTAAATTTCACATCCTGAAAGCGCACATTCCCTTCGAAGTGATCCTGCAAACATAAGACAGAGTTACTCCAGAGtgttagaACCTAGCCTCATGggtttcaaaatctagtggaaatccttcccagaagattcAAGGCTGTTATAGAAGCCATGGGACGGGGGGCaactcatatgggtgtgatgatcagaagTCCATACGTCTGGCAGTATTGTGTATAAGACTTCTGATAGTAACTAGTTGTTCAACAACAGGGGGAATACTTAAATACTGCAATCACTACTTTATGTAGAAGGTTCATTTTAATCACTTACAGAAAAACACCCTCAAACGTCATCATTTTCTGCTCAATGAGCCATGCACCAAACTTGAAGCAGCCTGCATAGGCAAAGTAGATCATGGCTtgggaaaaagagaaagtaaagcCAAAGATATGTGCCTTCTTCTGAGcattcctggaaaaaaaaaaaaaacatacaaccaCCAAAATCACTTTGTTACTCCTTTATGTAGTTAGCTATAAGACTTTTTGATCAAGCATAGACAGATGAACTGACTTGTATGGAACAATTAGGTTCTGCTGGTAAAGACTCTCAAACTTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00071 Fatty acid degradation
ko00380 Tryptophan metabolism
ko00982 Drug metabolism - cytochrome P450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387473 lncRNA upstream 17679 5311231 ~ 5314589 (+) False acbd7
TU386838 lncRNA upstream 302478 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 342952 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 348588 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 407632 4924178 ~ 4924636 (+) True G326440
TU387573 lncRNA downstream 203107 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 267619 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 494742 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 503968 5842219 ~ 5842438 (+) True G327391
TU388624 lncRNA downstream 1310029 6648280 ~ 6708779 (+) True G328024
XM_034298071.1 mRNA upstream 1054 5317198 ~ 5331214 (+) True crot
XM_026924204.2 mRNA upstream 17654 5311209 ~ 5314614 (+) True acbd7
XM_026924202.2 mRNA upstream 25129 5298302 ~ 5307139 (+) True nmt2
XM_026924452.2 mRNA upstream 37525 5260438 ~ 5294743 (+) True fam171a1
XM_026924393.2 mRNA upstream 73709 5254686 ~ 5258559 (+) True LOC113532775
XM_026923889.2 mRNA downstream 17931 5356182 ~ 5386626 (+) False rundc3b
XM_026923887.2 mRNA downstream 17933 5356184 ~ 5386626 (+) True rundc3b
XM_026923890.2 mRNA downstream 17933 5356184 ~ 5386626 (+) False rundc3b
XM_026923888.2 mRNA downstream 17936 5356187 ~ 5386626 (+) False rundc3b
XM_026924768.2 mRNA downstream 62682 5400933 ~ 5411050 (+) False dbf4
TU386814 other upstream 402114 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 408587 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1318730 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2762529 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 3117969 2210222 ~ 2214299 (+) False LOC113533074
TU389428 other downstream 2563541 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3049936 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3276822 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3430494 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 3430495 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile