RNA id: XM_026924804.2


Basic Information

Item Value
RNA id XM_026924804.2
length 2175
RNA type mRNA
GC content 0.45
exon number 11
gene id erp44
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7224022 ~ 7247279 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGTTCCGGGACTCGGCTCGGTGTACCGTCCGTCGTTTCCTTGCGGCAGAGGAGAGGAGGTGGTGTCGAGAGACTGGAAATATTTAACATCATAATCCTAATAAACTCCACTGTACAATGAAATTAACTTCATTCACGCCCGCCTCTGAACTCCACTATTTCACCATACTACTGATTACTGGGCTGTACACTCCAGGGCGAGGAGAGATCACCAGTCTGGATGCAGGGAACATTGACGACATTCTCAACAATGCTGGAGTGGCTTTAGTCAACTTTTATGCAGACTGGTGTCGGTTCAGTCAAATGCTACACCCTATCTTCGAGGAAGCCTCTAATGTGGTGAGAGAAGAATTTCCAGACCATTCACAGGTGGTGTTTGCCCGTGTGGACTGTGACCAACATACTGATATAGCACAACGCTACAGGATCAGCAAGTACCCGACCCTGAAGCTCTTCAGAAAtgggatgatgatgaagagggaGTACcgaggtcaaaggtcagtgtCAGCCATCGCAGACTTCATCCGGCAACAGAAAGTGGACCCGATCACAGAAATCCACAACCTGGAAGAGGTCAACAAAGTAGATAGGAGTAAGCGAACCATCATCGGCTACTTTGAGCAGAAGAACTCTGAGAACTACCGCACATATGAACGCGTGGCCAATATCTTGAGAGATGACTGCGTCTTCCTGGCAGCATTTGATGAGGTGTCTAAGCCCGAGAGGTTCAGTGGTGATAATATTATCTATAAGCCAATAGGAGAGACTGTTCCTGACATGGTGTATCTCGGCTCACTCACAAACTTTGACCTGACGTACGCATGGGTGCAGGACAAGTGTGTGCCACTGGTCCGAGAGATCACTTTCGAGAATGGAGaggagctgaCAGAAGAAGGCATTCCATTCCTGATCCTCTTCCATCAGAAGGAGGATACAGAAAGTCTAGAAAAGTTCCAGCAGGAGGTGGCACGCCAGCTTATCACAGAGAAGGGCTCTATAAATTTCTTGCATGCTGATTGCGATAAGTTTCGGCACCCTCTGCTACACATCCAGAAGACTCCTGCCGACTGCCCCGTCATTGCTATAGACAGTTTTCGCCACATGTATGTCTTCCCAGAATTCAGCGACCTCTCggtTCCAGGAAAACTGAGGCAGTTTGTGTTGGACCTCCACTCAGGAAAGCTGCATCGAGAGTTCCACCATGGGCCTGACCCCACAGACAGCACTCCAGGACAGgaGGAGAACAAAGAGGTGGCCAGCAATCCTCCAGAGAGCTCATTCCAGAAGCTAGCACCCAGCGAGAACCGTTACACCATCCTCAGGGATCGGGATGAACTGTGACCTCGTCTCACATCATCACCTAGCGCAGAACACCCGGCAGGCAGCCACCTGCATCACCTCTATTTTCATAACTTTTattttggctaaaaaaaaagaagacgaagaagaagaagaagaagaagaatatctGAAGTTTTTTGGTGGTGTGGggagaagaagaaatgaaagcgaatgtgagagagagagagagagagagagagagattttgattttacttttttttttttttttttttttttggagcttgTAAATATGTATGTCCTCTGTAGGTGAGTCGTCTAAATTAAataagcgttttttttttgttggtttttttttttcttttctctttttttttttttctttcaacccCTAGATTTTTGTCTCcttttttctgtaagaagaaaaataagcaGATAAACATTGATGGTCCTCCCCTGGCAGGATCTACACACTCAAGGCCTGGGGAATCATGGGAAATGACTCTGTGGTCAACCCTGTGGTGTCCCTTGTTTCAGTCTATAGTAgtatgagagtgtgagtgtgtaagagtgagagagtgtgtgtgtgtgtgagtgaatgtgagagagagcacATTGGTACATTATTAGTCTGTATTCTTACATAATGTGGGAGTTTCAGACTCGTCAAAAGTCCTTGCTTGTTAAAATCCGGACTCATATCAGCCCATTCCATGAGGAGGAGTGGTAAGGGGTGGGGCTTAATAAGGGGTGGGGCTGTAAGAGGGGGTGTTTGTACATCATCTCAGAACAGAGAATCTCAGACTGGGgaatggaaacaaaaaaaacaaacaaaaagtaaattaaaaattaaagggaaaacattttacaggA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388878 lncRNA upstream 87300 7128166 ~ 7136722 (+) True G328260
TU388835 lncRNA upstream 178744 7045046 ~ 7045278 (+) True G328222
TU388815 lncRNA upstream 194621 7023155 ~ 7029401 (+) True G328208
TU388766 lncRNA upstream 262646 6949559 ~ 6961376 (+) True G328161
TU388624 lncRNA upstream 515243 6648280 ~ 6708779 (+) True G328024
TU388944 lncRNA downstream 21366 7267734 ~ 7268762 (+) False G328313
TU388945 lncRNA downstream 21366 7267734 ~ 7268762 (+) True G328313
TU389077 lncRNA downstream 126912 7373280 ~ 7373500 (+) True G328427
TU389095 lncRNA downstream 145873 7392241 ~ 7392448 (+) True G328441
TU389297 lncRNA downstream 410773 7657141 ~ 7659079 (+) True G328620
XM_034297851.1 mRNA upstream 38957 7153823 ~ 7185065 (+) True tex10
XM_034297850.1 mRNA upstream 38957 7154176 ~ 7185065 (+) False tex10
XM_026924580.2 mRNA upstream 100631 7121016 ~ 7123391 (+) True rbm12ba
XM_026924799.2 mRNA upstream 158873 7050653 ~ 7065149 (+) True nacad
XM_026924704.2 mRNA downstream 140212 7386580 ~ 7390884 (+) True alg2
XM_026924705.2 mRNA downstream 140212 7386580 ~ 7390884 (+) False alg2
XM_026924642.2 mRNA downstream 171006 7417374 ~ 7424191 (+) True LOC113532919
XM_034298069.1 mRNA downstream 179911 7426279 ~ 7451187 (+) True tmem245
XM_034298070.1 mRNA downstream 179912 7426280 ~ 7451187 (+) False tmem245
TU387482 other upstream 1885771 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 2293868 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 2300341 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 3210484 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 4654283 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 655424 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 1141819 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 1368705 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 1522377 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 1522378 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile