RNA id: TU388945


Basic Information

Item Value
RNA id TU388945
length 308
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G328313
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7267734 ~ 7268762 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttctCTATGTTATGCTGGTGCTTATGAAGGCGCTCCAGATCAGTGGGAATCACCACTTTGATGAACTTCTGGATGGGTCCTTCCAGGCGCCGCAGCGTCAGCTTACCCTCCTCATCTGCCATGCTTCAACCTCTCTGAAAGGTCACGGGTTCGACCATACACTCATCCTATACGTATAGTGTGACTCTTGAGGATTGATGCCAAAAAAACCGTTTTGGTGCAAAAAACCTTTAAaggtgattttgtttttgttcctcGTCAAAAACTTTCTGTTTGTACATACTTCCTTGTGCATCACTGAAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388910 lncRNA upstream 20455 7246330 ~ 7247279 (+) False erp44
TU388878 lncRNA upstream 131012 7128166 ~ 7136722 (+) True G328260
TU388835 lncRNA upstream 222456 7045046 ~ 7045278 (+) True G328222
TU388815 lncRNA upstream 238333 7023155 ~ 7029401 (+) True G328208
TU388766 lncRNA upstream 306358 6949559 ~ 6961376 (+) True G328161
TU389077 lncRNA downstream 104518 7373280 ~ 7373500 (+) True G328427
TU389095 lncRNA downstream 123479 7392241 ~ 7392448 (+) True G328441
TU389297 lncRNA downstream 388379 7657141 ~ 7659079 (+) True G328620
TU389473 lncRNA downstream 836500 8105262 ~ 8105462 (+) True G328750
TU389477 lncRNA downstream 866318 8135080 ~ 8135455 (+) True G328754
XM_026924803.2 mRNA upstream 21366 7224022 ~ 7246368 (+) True erp44
XM_026924804.2 mRNA upstream 21366 7224022 ~ 7246368 (+) False erp44
XM_034297851.1 mRNA upstream 82669 7153823 ~ 7185065 (+) True tex10
XM_034297850.1 mRNA upstream 82669 7154176 ~ 7185065 (+) False tex10
XM_026924580.2 mRNA upstream 144343 7121016 ~ 7123391 (+) True rbm12ba
XM_026924704.2 mRNA downstream 117818 7386580 ~ 7390884 (+) True alg2
XM_026924705.2 mRNA downstream 117818 7386580 ~ 7390884 (+) False alg2
XM_026924642.2 mRNA downstream 148612 7417374 ~ 7424191 (+) True LOC113532919
XM_034298069.1 mRNA downstream 157517 7426279 ~ 7451187 (+) True tmem245
XM_034298070.1 mRNA downstream 157518 7426280 ~ 7451187 (+) False tmem245
TU387482 other upstream 1929483 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 2337580 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 2344053 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 3254196 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 4697995 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 633030 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 1119425 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 1346311 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 1499983 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 1499984 8768746 ~ 8819267 (+) False LOC113532648