RNA id: TU389090


Basic Information

Item Value
RNA id TU389090
length 1550
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G328439
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7376887 ~ 7378436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGTGTTAGTGACAATACTGTACCTACCATGTCAAGAAAATATCCAGGTTTGCCATAATAATATAGATTTATGCCTTTTCTTTAGTGAATAATTTCACCTAGATGCTGTAGAttactgtagtgtgtaatgtaatgctaTTATTTCCATCTGCTTGgtgctcaaaatatttgtacagtcaggtccataagtatttggacagtgacacaattttcataattttgcctctgtacaccaccacaattgTTTTGGAATGGAGCAATCAAGAtttgattgaagtgtagactttcggctttaattcaaggggtttaacaaaaatattgaattaactgtttaggaattacagccaaatTCCTCAATTTTTTAgagtccttccattttcacaggctcaaaagtaatcgGACggttgactgataagcagtttcatggccttgtgtggcctgtttttttgttatttcatgacaaattaaggagataaaaggtctggagttgattccaagtgttgaatttgcatttcaTGGGagctctcaatatgcagtccaaagaggtgagGATacaagtgaaaaaacaaaacagacctatcagagagacagcagaaagttTATGAGTGGCCTAAggaacaatttggtacattcttaaaaacaaGGAATGcgctggcgagctcagcaacaccaaaaggccggGAAGATATCTGGATGAATGgagaattctttctttgctgaaGAAAAAcgccttcacaacatctagtgAAGTCAAAAACATTCTaaaggaggtaggcatatcatttgTCAAAATCtgcaatcaagagacaccttcatgaatgtaaatacagacggtttacctcaagatgcaaaccactggtaacactcaagatcAGAAAGGaaagattagactttgctagaaaacatcgattctttggacagatgaaaccaaaactaacttgtaccagaatgatgggaagagacaagtatggagaaggaaaggaagggctcatgatccaaagcgtACCACATcgtctgtcaaacatgtggaggcagtgttatggcatgggcatgtttggctgccaatggaacaggctcactggtgtttattgatgatgtgactgctgatagaagtagcaggatgaattctgaagtgtatagagctatattttctgctcagattcagtcaaatgctgcaaaactgcaggacagcgcttcacagtacagatggataatgacccaaaacgtaccgtgaaagcaacccaagagcttggaaatggaatgttcttaaatggtcAAATCactcacctgacctcaacccaactgagcatgcttttcacttactgaagacaaacctgaaggcagaaagacccaaaAACAAGAAGCAACTGAAGGCCGCTGCATTAAAGggctggcaaatcatctcaagggaggaaactcaacattttgatgtccatgggttccagacttcaggcagaaATAGTATTTGCATCTAAAGTATTTGCAtctaagtattaaaaataatcctaatatgtATGATTGTTagttgtccagttacttttgaaaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388824 lncRNA downstream 344163 7031364 ~ 7032724 (-) True G328215
TU388687 lncRNA downstream 635841 6648296 ~ 6741046 (-) False G328083
TU388686 lncRNA downstream 668120 6648296 ~ 6708767 (-) True G328083
TU388498 lncRNA downstream 1045602 6256403 ~ 6331285 (-) False arhgap33
TU388102 lncRNA downstream 1292238 6083366 ~ 6084649 (-) True G327560
TU389234 lncRNA upstream 69737 7448173 ~ 7448967 (-) True G328565
TU389231 lncRNA upstream 71961 7450397 ~ 7452117 (-) True G328562
TU389250 lncRNA upstream 130433 7508869 ~ 7509107 (-) True G328580
TU389258 lncRNA upstream 179959 7558395 ~ 7558649 (-) True G328588
TU389259 lncRNA upstream 180248 7558684 ~ 7558963 (-) True G328589
XM_026924343.2 mRNA downstream 66875 7279561 ~ 7310012 (-) True nr4a3
XM_034298223.1 mRNA downstream 108080 7248388 ~ 7268807 (-) False stx17
XM_034298221.1 mRNA downstream 108121 7248388 ~ 7268766 (-) False stx17
XM_026924777.2 mRNA downstream 108125 7248388 ~ 7268762 (-) False stx17
XM_034298222.1 mRNA downstream 108142 7248388 ~ 7268745 (-) False stx17
XM_026924706.2 mRNA upstream 295 7378731 ~ 7386347 (-) True sec61b
XM_026924208.2 mRNA upstream 75438 7453874 ~ 7568606 (-) False galnt1
XM_026924206.2 mRNA upstream 75438 7453874 ~ 7568606 (-) False galnt1
XM_034298032.1 mRNA upstream 75438 7453874 ~ 7568606 (-) True galnt1
XM_034298033.1 mRNA upstream 75438 7453874 ~ 7568605 (-) False galnt1
TU388974 other downstream 314459 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 946955 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 1398508 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other downstream 1398619 5876096 ~ 5978268 (-) False zfpm2a
TU387192 other downstream 2399360 4963617 ~ 4977527 (-) False ubr5
TU389089 other upstream 344 7378780 ~ 7386306 (-) False sec61b
XR_003404173.1 other upstream 2906398 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 3144296 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 3544690 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 3703832 11082268 ~ 11083151 (-) True G330379

Expression Profile