RNA id: TU389774



Basic Information


Item Value
RNA id TU389774
length 627
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G328995
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8257525 ~ 8264036 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GGTGCAGACTTTGTTGAAGCTGACAAAAAGGGCCGTGTTGAGGAAGCAGCAGAGAGGCAAGTCAGCATAGAAGGCCAGAGAGGTAAAGAGCAAGAGTATAACCTGGGGAAGAAAGGTCACTAGACCCAGAGCAAAGCTCCATTCACTCTCCACTGTTAAGTAAAACATGTAGAAGTATGGGGAGAAATTATGACGAATGTCCCGCCTTGTTAAGTGGTAGAAGTAGGTTTCTTGGAGGAAATCCCAGCCATACCCTGCGTTACAAGTCTGGATGCGTCTATAAACACATGATAGTCGATATCAGTGTATTTAACCACCATGGTTTTGTCTTGATAAATCCCAAAGCCAACCAAACATAAACGGATAACAAATGCGACGCTGTACAGCGTCCCAAACTTCAGTAGTTGGGATGAAAACATGTTACCACGTGACATAACCCAATTCACTGATTGTTAGTAAATCAGATAATCCAAATCCACAATCCAGTGCGAGCTCCATTAATCTCACTTCATCTTCGCTTAAACATGTCAGCCACATGCACGATTCATGTTTAAGTAAACTTTCAATAAATCTCACTCAATTTTAAGTCAAGTTAAATGATACACCAGAAACAAGGGGCAGGTTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU389722 lncRNA upstream 40871 8216446 ~ 8216654 (+) True G328944
TU389478 lncRNA upstream 121362 8135517 ~ 8136163 (+) True G328755
TU389477 lncRNA upstream 122070 8135080 ~ 8135455 (+) True G328754
TU389473 lncRNA upstream 152063 8105262 ~ 8105462 (+) True G328750
TU389297 lncRNA upstream 598446 7657141 ~ 7659079 (+) True G328620
TU389833 lncRNA downstream 72316 8336352 ~ 8336582 (+) True G329042
TU389845 lncRNA downstream 110918 8374954 ~ 8378734 (+) False osr2
TU389908 lncRNA downstream 388400 8652436 ~ 8665836 (+) True G329111
TU389928 lncRNA downstream 430367 8694403 ~ 8699160 (+) True G329126
TU390105 lncRNA downstream 484784 8748820 ~ 8749033 (+) True G329288
XM_026924062.2 mRNA upstream 6702 8218540 ~ 8250823 (+) True LOC113532619
XM_026924063.2 mRNA upstream 6702 8218540 ~ 8250823 (+) False LOC113532619
XM_026924837.2 mRNA upstream 42696 8196241 ~ 8214829 (+) True LOC113533036
XM_026923985.2 mRNA upstream 67266 8184092 ~ 8190259 (+) True LOC113532572
XM_026924274.2 mRNA upstream 101232 8140082 ~ 8156293 (+) True cdh17
XM_026924479.2 mRNA downstream 983 8265019 ~ 8268963 (+) True mrpl17
XM_026924756.2 mRNA downstream 22207 8286243 ~ 8298470 (+) True pop1
XM_034298207.1 mRNA downstream 22207 8286243 ~ 8298470 (+) False pop1
XM_026924643.2 mRNA downstream 66615 8330651 ~ 8334727 (+) True LOC113532920
XM_034297934.1 mRNA downstream 66615 8330651 ~ 8334727 (+) False LOC113532920
TU389428 other upstream 354917 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 2919274 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3327371 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3333844 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 4243987 4011410 ~ 4013538 (+) False hamp
XR_004576973.1 other downstream 124151 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 351037 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 504709 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 504710 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 589292 8853328 ~ 8856276 (+) False bmp6

Expression Profile