RNA id: TU389908


Basic Information

Item Value
RNA id TU389908
length 3440
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G329111
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8615073 ~ 8665836 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGAATGAGTCTGCTTTTATTAACATATTAGTATGCAGTGAGACATTCTGAGATACATACATATCAGTTGCAAAGCAAAATATAGactaaacaaagtaaaatgtgcaCATCTAAAATGTGAAAAGGTAAATACGGTATTTGGCAACTAGGAAAGATGAATGGTGACtaattaacagaaataaaagataaaGGTGGCTTGGTGATGCTTTCAAagattaaaattacaaaatgttctCCATAATGCAGTGGTACACGTTCACAGTCCTGTGGAACTCCATGCAATGCACATTTTGTTTGTGCTCTAATACTCCAGACTCAGCACCTAAATAGGGATTAAAATAAGTAGTGCATGTTGTCCACATGACTGGAACAGAGACTTACTGTTACTGTATATTGGCAGCAGtggtgtataaaataaaatagaaatactATTTATGCATATCATGCTTAAGTACATTTTGGTAATACTTCTACTTTATTGAAGTACAAATGTTTGTCAGCTTCACTTTTTAtatcactacattttcaaaagcaaatagctttttttttattccccttaAATTTTCCCATATATTTTCCCCAAATTTACCTTTTTACCTCATCAGAAAAAACATCAAGTTGATGAACCGTAGTAAGTAAACAGACTATTTTTGTgagaaatacacaaaatacataaGTGCTTCATCAATAGATAATGGTAACATTAGAAGAAGTAGAAATTATGTAGaaacttcttttaaaaatggaaaggacacagatatattttttgttcttcagtTTACAATATTTTGAAATACTATTAAATTTTCCCACTGAAGACACCCTGGTTTTAACATAAATCCAacacttaaattaaattaatgtctatttttttcctcaaatatTCTAGTCCTCAGCCAACtctttgtaaaaaaatttttaatatcaGTCTCAGTTATAACACAGATAGGAATAGGCACCAAGACCAACAGAATGTCTTTACTAAGAGTCATCAAGACTTTAAAATTcatattgttgtgtttgtggGATTTGTATTGTTAGGAGATCATAGTGCTGTGGTGATGATTGCTCTAATAGAAATGTGCCAAGCAGCCACATGGGGCTGGTGGTTAAAATCATTAATGTAACATGTAGATTGATAtagattaataaaacataacaaaattTCAGTGTAACAAAAGAATGCAGTAACTGTGTCtccaaaaataaagaaataatattaaacagaaatttCTGATATGAATATACGCAAAATATTAGAAGAATTTGTTGGTTTTCCTCTCTTGCATAAGTGAAACATGTTCGTATATTAAGTCAAACAGTGTTTGCTAACTAGACTAGCTGTAGATAAGTATGTGTGTTGTTAGTACATTAATTAAcaatgaatgtttttctttaaacatatttttacaaatGTCATGATCCTTATGTTTTGGCTTACACTTCTTAACGAACTTGTTGCCATTTCACTGAGTCCTTACCCCAAACTTTGCTGCAAATTAGCTGAGCAATCAGCTTACCTAAACTAGTATATAGGCCAAACCTTATACTGTCAACAATCATTTGAAATGAGACTTTAACTTGTCTACAACCATGGTGAGACTTCtcatcttttcttcctctcatcttttcttcatggacacagacacagacacacacacatacacatgcacacacacacacacacacacacacacacacaaatactcatACACCCACACCTATGATTCCTATGAATCATATGAACATCTATGAACAACCTCTAATACCTGAATCTGCAGTATACAGCAGTCTCCCAGCTTACgccccttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgccatctAGTCACTGTCTCTATCATGATCCTGCTCTGCAAGCACCAGCTCCGAATCTTCTCCTGTCTCCAGCATCTCAGcactctcctccatctctcccatctctcctccctccatctccatctcttcttcctctcctccctccattACTCCATTCTCTACTTCCTCTGTTTCCCCACCCACTTCCACCATTTCTGTGCCTTGGATTTCCACCTCCCCTTCACGGATTTTCTTCACATGAAAGGTGAATGGTGGTACCTTATACACAGCAGTTTTTGACCGAGCATAAATGGTGTGATCAGGCGTGAAAGACTTCACCATCTTCTTCTGCGAGCTTTTCAGCTTCTCTTTACGCTCTGGGTTGACAGACATACGAGTGCTGAGCTTGCCCATTTTCTTCTCAATGTTGTGGCGTGTCTtttccaggttctcccgtgtCTTCTGCCTAGTCTTCTCCAAGTTCTCTTTGGTCTTTTGCTTGGTTTTTTCCAAGTTTTCTTTGGTCTTCATTCGTGTCTTCTCCAAGTTCTCTTTGGTTTTTTGCTTGGTTTTCTCAAGGTTCTCCTTCGtcttttgtttggttttctCCATCTTTTCCTTGGAGAAGactgttttgatattttgaacCCGTTGAAGGCTGCTGCGTTTGATGCGTTCTGCTCGGGTCTCTTCAATGGTCTCCTCAATCTCTACTTCTTCTTCATCAGACGACAGGTCTAGATGAGCCTTCTCTCCTCCAGCCTCTTCACCCTCCTCCATAGCAGCTTTGAGCTCCAGCTCGCCCTCACCCTCTGCTGGCTGGGGCACTTTCAGGGACTTGGCCACTGTGGTCTTAGAGGGAAGTTTCACCTCATCCTGTAAATCATGACTTTAAAGTTTCTCCTCTTGAGAAGCTCATTCTCATTGCTCTCTAGCCGCTTTATCTGGCTGCCCTGCTTCTCCAGGTTACTGCGCACTGTCTTCACATTCACGCTCACTTTGCGCACTTTTTCTAACATCTTGTTCACCGAGTTGGCTGTGGTAGTGTGACTCTTGGTTAACTTGGTGAGCTCCCCCTCAATCCCAGTGACCGAGCGCTCCATCTCTTGCTGCCGGGCCTCCAGGCCGGCCTGCGTCTGCTGGATCTGGTCTACTCTACCAATGATCTTATCCAGCAGAGCCAGGATCATCACCCCATTCATCTGGCCATTGCCTTTGTCTCCTTCCTCTGCCTCCTCTTTCTCCACAACTTCCTTTGATTTGGCCTCTGTGGTTgcctcttcctcatcatcagaGGGAGGAAGGTTGAGCTCATCGTCAGAGATCTCAGTGAGGGTCTTGTGCTGCTCAGTGTCTGGCTGCAGGCTGGGGACTTCTAGCACTTCCATGACAAAAGTTTCAAACCACAGGTAAAAGAATGGAGCAGTGAAAGAGATGGGATTTTCAGCTTTTTATGTGTCCTTGTGTGTGCTCTGGAGTTTACCTTGGGTTGCTTCCTCTTGTTTGAACACTTTCTGCTGTTTTCCTGAGAAATACCACACTTGTCAGCTCACACTCTGTGCTTTCAAGGCTCTGTGCAGCAGGAGTGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389845 lncRNA upstream 273702 8374954 ~ 8378734 (+) False osr2
TU389833 lncRNA upstream 315854 8336352 ~ 8336582 (+) True G329042
TU389774 lncRNA upstream 388400 8257525 ~ 8264036 (+) True G328995
TU389722 lncRNA upstream 435782 8216446 ~ 8216654 (+) True G328944
TU389478 lncRNA upstream 516273 8135517 ~ 8136163 (+) True G328755
TU389928 lncRNA downstream 28567 8694403 ~ 8699160 (+) True G329126
TU390105 lncRNA downstream 82984 8748820 ~ 8749033 (+) True G329288
TU390192 lncRNA downstream 277042 8942878 ~ 8945556 (+) True G329354
TU390202 lncRNA downstream 307401 8973237 ~ 8973587 (+) True G329361
TU390394 lncRNA downstream 669350 9335186 ~ 9335808 (+) True G329523
XM_026923965.2 mRNA upstream 73362 8558567 ~ 8579074 (+) True LOC113532557
XM_034298179.1 mRNA upstream 102198 8388187 ~ 8550238 (+) False LOC113532774
XM_034298177.1 mRNA upstream 102198 8388187 ~ 8550238 (+) True LOC113532774
XM_034298178.1 mRNA upstream 102198 8388187 ~ 8550238 (+) False LOC113532774
XM_034298180.1 mRNA upstream 135170 8388187 ~ 8517266 (+) False LOC113532774
XM_026924114.2 mRNA downstream 11519 8677355 ~ 8745970 (+) True atp6v0a1b
XM_026924116.2 mRNA downstream 11519 8677355 ~ 8745970 (+) False atp6v0a1b
XM_026924117.2 mRNA downstream 11519 8677355 ~ 8745970 (+) False atp6v0a1b
XM_034297944.1 mRNA downstream 102910 8768746 ~ 8821311 (+) True LOC113532648
XM_034297945.1 mRNA downstream 102910 8768746 ~ 8821311 (+) False LOC113532648
XR_004576973.1 other upstream 167603 8388187 ~ 8484833 (+) False LOC113532774
TU389428 other upstream 749828 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 3314185 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3722282 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3728755 4920980 ~ 4923681 (+) True fabp10a
XR_004576949.1 other downstream 102909 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 102910 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 187492 8853328 ~ 8856276 (+) False bmp6
TU390686 other downstream 1125848 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1765497 10431333 ~ 10432864 (+) True G330038

Expression Profile