RNA id: XM_034298063.1


Basic Information

Item Value
RNA id XM_034298063.1
length 4053
RNA type mRNA
GC content 0.41
exon number 8
gene id bmp6
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8851404 ~ 8922793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAACGTCTTCAGGAACATGAATTCCGCATGAATTtaagtctctgtctctgtcgtGCTAGAGGTCGTGCTTTggccagaaaaaaattaaatgtaggGGCgcataacaaacaaacaaacaaataaaagcaccAAACAAAAGAAGTAATAAAATCTGTATCGTTATATACAACAAACCTTTTTCTTAATCCCAAACTAAAAATAGCCCTCGACCAGTTGTGATAGGCAGGCTATAATTTGGGGTCCGATAGCTCCACCTCTCCACCTCTAATCCTGGGCGGGTGCAGCAGTTACACTGCGTTCTGCCACTGTACGCACTTCACCGTGGACCGAAAGTGCTACCGAATTTTCTCCAAAGCTTGTAATTGAACTGCAATGGAAATTAAAGTCTCTTTCTGTCACGTTATTTCGGAATACTATCTACTGAACTTTCTTTTGGTGTTTTCCGGTTTTCAATTTTGTCAGAATTAATGTCAGTGTGCCGAGCTTGAAACACGTCACCCTCAGGTGTCTCATAATCTCGAAAAGTCacccttattattttttttttcgaagCTAGCCATCGCGCTTTGGATTTAAtggatttgattttgaaaaACGAATTCTTCCATTTGTTGTCTCCTACAGGATGGTACCTCCTGTGGCGTGAAGGTAGCAGTTACTTGTTTAACAGCACCAGCGAACTCCATTCGAGATCCACACATCGGCGTTTACGGACTCAAGAAAAGCGAGAGATGCAGAAAGAAATCCTGTCCATCCTGGGACTGTCACATAGACCCAGACCTCATCTATGGAACGGCAAATACAACTCAGCACCCCTTTTCATGCTGGACCTGTACAATGCAATAAACGTCGAGGAGAAAACCAAAGTAGACGGGATATTGGACCCTTATAAGTCAGTGTTCACCTCTCAAGAACCCCAGTTAGCCACAATTCAAGACAACGCGTACTTAAATGAAGCTGACATGGTGATGAGCTTTGTGAATTTAGTGGAGTACGACCGGGAGTTGTCTCCTCATAGAAGACACCATAAGGAGTTCAAGTTCAATCTGTCTCAGATCCCAGAGGGAGAGACAGTTGCAGCAGCAGAGTTCAGGATCTACAAGGAATGTGTGGGCACTGCTTTTCACAATGAAACCATCCGACTGAGTGTTTTTGAGGTGGTGGGCGAACATCTAGACAGAGATGCAGACCTTTTTCTGTTGGAGTCCCGCCAGCTGTGGGCAGTGGATGAAGGCTGGCTGGAATTTGACATCACAGCCACCAGTAACCTCTGGGTAATGAATCCACATCATAATCTGGGCCTGCAGATAAGTGTGGAAACTAACAACGATTTGAAATCCCTCCTTACAGGAGAGAACATTAACCCTAGAGAGGCAGGGCTAGTCAGTCAGGATGGGCCTCTGGAGAAGCAGCCCTTTATGGTGGCCTTCTTCAAGGTAAAAAAGCTCCACATCCGCACAACCCGCTCTATAGGAAAACCCAGACAGCAGAGCCGCAATCGTTCCACTTATCCACAGGAGGCACAAAAAGGCCCAGGACACACAGCAGATTATAATAGCAGTGATCAGAGGACAGCCTGCAGAAAACATGAACTATACGTTAGCTTCAGAGACCTGGGCTGGCAGGATTGGATTATTGCACCTGAAGGCTATGCAGCTAATTACTGTGATGGAGAATGCTCATTCCCATTAAATGCTCACATGAATGCTACCAATCATGCTATTGTACAGACACTGGTCCACCTGATGAACCCCGAGAACGTCCCGAAGCCATGCTGTGCTCCAACTAAGCTGCATGCCATCTCTGTGCTGTATTTTGATGACAACTCCAACGTCATCCtgaaaaagtacaaaaacatgGTGGTGCGTGCATGTGGCTGCCACTGACATTGAGGAGGACATGCAAGAGTGCCCCTGCTAAACAGCTGCAGCTCAGAATGTGGGAGCAAGCATGTATGTAAGAGAAAGATGTTAGAATACTTGTGTGtttgcgctgtgtgtgtgtaagtgtgcatcCTCTTCCTCACCATGCATGCACCATAAATACTGGATGTGGGATTATTAAGGTCTGTGTGAGGAATGTGctgtttgtcttctttttccTGTTCAGACACAGTCTGTTCTCATGTACTCCTGCCACCTCTGGAAAATATGGACATTGAGCATTCTATCTACATTTCtatatagaatattttatatttattctgtatttgactaaaactttattttaacaaCTCATATTATCAGTAACAACTAATGTCAAATACATCCATATAATAGcacaaaaaaattagtagtttttctattttgtaaaaaaaaatcagataaacTTGATTGGACTGTTTTTAGGTCTaaataaaatggcatttttatTCTCTCAAATGTTGCTCTACACCTCCAGTGGTTTGCCTTAACCAACCAGAGGTGACACCTGAGACCTCACCAGAATATGTGCGTGTGCGCAcacacgtgtatgtgtgtatgcaggtATTTTAGTAGCATCTGTATAATACCTCCAGTTTCAGATTAGCAACAATTAACAATTCAgaacaccaaatttcagctcagtaAGACTTTCAGgtcctgagaaacagctatttgaactCTGCCACCTGTCAAGATCCATTCCCCCAAACTTCATGCATCCTCATAACATTGGCCTGAAGATGCCTTTCAAGTTGCATGTGGATCCATGCAACCAGTCCTCAGTTACTGATGTTTTAGTAAATCAAACTCTGCCCCACTTGGATTGATGGGCATATGGAGACCAGGTTGTTTGCAAATCTCAACATGTTGTTGATAATTCTTGAATATTACAATTTCTGTGCTAGTCCTGTATAAATTTTGTGTGAAACCATGCAAGGAATCATGAGTTAAAACTGTATGTGTAAATTAGTCTCCACCTCCTTAGAACTGATTTAAgtatggtggccatattgtttagaaatgtcaacatgtttttgatagcTATTGaggttcacacacacctgagtatTTTCACATCAAgattttgaaaattttgaaaagGATCCCAGGACCAGTTTACAAAAGTAGGTTTCAGATATTATGCAAATAATCACAAATTTCCGTAGGTGGAGCTAAATGGTCGAAaaggcaggttttttttttttttttttagaatttgaGCAAACGAAACAATTTTAAAACCAATTTTCACTGTACCCCTTATCTTCCAAGAGATTGCTtgtttgtgtgcacaaacatgaatagcaCCCCCAAGTGGCCAAGCTGATTTAAGATTGCATCAGATAGTAGTGGTTCCCTACCCGAAcctaccattcaagtttcatgacaaTAGGTCACTGTTAACTgttaaatgcctgctgaaagctgatttggctgatgatgttttttttttgtttttttttaattaattaggtCAACATCAAAAATCTACTAACAGATTAGCATATAGATGCACCCTACCAAATCAGCTCGGTGGGACATATGATTCCGGAAAAACAGTTATCTGTCCTTAGCCCCGCCTCCTTTTTCTGACCATGCCCCAAACTGCTCAGAGTCATCTGGCTCATAAGTATTGTATGACAATTGGTGGCCatgttgtttacaaatgtcaacgTGTTTTTGACTTTGCTAATTCTGAACTATTAGTGTAGCTACTTGATGCTGCAAACTAattttagcttgctagctagccagTCTCAGGGTTACATTAGAGAACATACAACTCCTGATATAACTTTATCCTTGTCTGCATCAGCTGGTGTTTAGGGACACTAGACACCACGGGACTGTCAAACAACTACCTAACCTCAGTAACATTTAACTTCGTTTACATGCAGTTTAACATACAGTCCCCTCAGAATGTACTGGAACAGCatggccaattcttttgtttttctatacactgaatagatttggatttgagatcaaaagatgaatatttacatttagaggTAAATCTTTACAAGAAAtataatttcctgatatttacatctagatgtgttaaacaacttaaaatatggcaccttttgtttgaacccacccacaTATTcgagtgatcaaaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390105 lncRNA upstream 103981 8748820 ~ 8749033 (+) True G329288
TU389928 lncRNA upstream 153854 8694403 ~ 8699160 (+) True G329126
TU389908 lncRNA upstream 187178 8652436 ~ 8665836 (+) True G329111
TU389845 lncRNA upstream 474280 8374954 ~ 8378734 (+) False osr2
TU389833 lncRNA upstream 516432 8336352 ~ 8336582 (+) True G329042
TU390192 lncRNA downstream 20085 8942878 ~ 8945556 (+) True G329354
TU390202 lncRNA downstream 50444 8973237 ~ 8973587 (+) True G329361
TU390394 lncRNA downstream 412393 9335186 ~ 9335808 (+) True G329523
TU390393 lncRNA downstream 429357 9352150 ~ 9352733 (+) True G329522
XR_004576957.1 lncRNA downstream 549823 9472616 ~ 9482817 (+) True LOC117595781
XM_034298068.1 mRNA upstream 1698 8839566 ~ 8851316 (+) True zgc:101569
XM_034297944.1 mRNA upstream 31703 8768746 ~ 8821311 (+) True LOC113532648
XM_034297945.1 mRNA upstream 31703 8768746 ~ 8821311 (+) False LOC113532648
XM_034297946.1 mRNA upstream 31703 8768746 ~ 8821311 (+) False LOC113532648
XM_026924117.2 mRNA upstream 107044 8677355 ~ 8745970 (+) False atp6v0a1b
XM_026923884.2 mRNA downstream 70993 8993786 ~ 9005220 (+) False tfap2a
XM_026923883.2 mRNA downstream 72974 8995767 ~ 9005220 (+) False tfap2a
XM_034298291.1 mRNA downstream 74079 8996872 ~ 9005220 (+) False tfap2a
XM_026923885.2 mRNA downstream 74304 8997097 ~ 9005220 (+) True tfap2a
XM_026924687.2 mRNA downstream 160186 9082979 ~ 9188076 (+) True ofcc1
XR_004576948.1 other upstream 33747 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 37454 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 187178 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 368181 8388187 ~ 8484833 (+) False LOC113532774
TU389428 other upstream 950406 7901792 ~ 7902608 (+) False LOC113532663
TU390686 other downstream 868891 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1508540 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1672409 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1951416 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1951416 10874209 ~ 10984209 (+) False acad11

Expression Profile