RNA id: TU390202


Basic Information

Item Value
RNA id TU390202
length 351
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G329361
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8973237 ~ 8973587 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTTTGTTACATTGGTGCCGAAACCCGGGAGGGAGGAGGGATGAGCTGTCAGAGAGCCCTCGCCGCTGCGGGAGGATCACGGTGCCAAGGAAGTGTGGTGCTGGAGCGGTTGCCGGACAACAGAGGAGTTGCTGCCTGGAAGGAGTGGCTGCTGTCCGCCTGAAAAGGGGAAGAGCCGTAGCCATCAGCCAGGAGGCTCAGGGCCAGCGCCTGGTGTCATGGGGATCGCTTCCTGGCTGGCCGAGGACCAGATGACTGAGGACTGGGGACTGAGGAAccaggtttttcttttttctttctcctctgtcACCCTCTTACTGTCTCTATTGctcactctgtctctcgctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390192 lncRNA upstream 27681 8942878 ~ 8945556 (+) True G329354
TU390105 lncRNA upstream 224204 8748820 ~ 8749033 (+) True G329288
TU389928 lncRNA upstream 274077 8694403 ~ 8699160 (+) True G329126
TU389908 lncRNA upstream 307401 8652436 ~ 8665836 (+) True G329111
TU389845 lncRNA upstream 594503 8374954 ~ 8378734 (+) False osr2
TU390394 lncRNA downstream 361599 9335186 ~ 9335808 (+) True G329523
TU390393 lncRNA downstream 378563 9352150 ~ 9352733 (+) True G329522
XR_004576957.1 lncRNA downstream 499029 9472616 ~ 9482817 (+) True LOC117595781
TU390448 lncRNA downstream 506752 9480339 ~ 9480553 (+) True G329574
TU390455 lncRNA downstream 517687 9491274 ~ 9491545 (+) True G329581
XM_034298065.1 mRNA upstream 50444 8852464 ~ 8922793 (+) False bmp6
XM_026923884.2 mRNA downstream 20199 8993786 ~ 9005220 (+) False tfap2a
XM_026923883.2 mRNA downstream 22180 8995767 ~ 9005220 (+) False tfap2a
XM_034298291.1 mRNA downstream 23285 8996872 ~ 9005220 (+) False tfap2a
XM_026923885.2 mRNA downstream 23510 8997097 ~ 9005220 (+) True tfap2a
XM_026924687.2 mRNA downstream 109392 9082979 ~ 9188076 (+) True ofcc1
TU390118 other upstream 116961 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 153970 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 157677 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 307401 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 488404 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 818097 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1457746 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1621615 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1900622 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1900622 10874209 ~ 10984209 (+) False acad11

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU566107 True 472 lncRNA 0.58 1 CI01000340 12713627 ~ 12714098 (+)