RNA id: TU390329


Basic Information

Item Value
RNA id TU390329
length 205
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G329461
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9010461 ~ 9010665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAGCAAGAATTTCACTTCCCTGTTCTGTAAGGTGAGTCCAGGGGATGTAGACTGGATGACTTAGCTCATAGAAAGGGGTTTGGAATAAGGCTACAACCCCAGGTGACCCTTTCCTTTCCTGagtaaataaatttgtatttgtcCCATGTTACCAATTTGTTAGCcacttatatttatttaatgaaatcaCACACTTTACCCA

Function

GO: NA

KEGG:

id description
ko05110 Vibrio cholerae infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390299 lncRNA downstream 68103 8942137 ~ 8942358 (-) True G329447
TU390289 lncRNA downstream 89448 8920280 ~ 8921013 (-) True G329438
TU390255 lncRNA downstream 159149 8847485 ~ 8851312 (-) True G329404
XR_004576950.1 lncRNA downstream 171467 8823190 ~ 8838994 (-) True LOC117595776
TU390107 lncRNA downstream 259417 8750842 ~ 8751044 (-) True G329290
XR_004576976.1 lncRNA upstream 38575 9049240 ~ 9050902 (-) True LOC117595798
XR_004576977.1 lncRNA upstream 46550 9057215 ~ 9081783 (-) True LOC117595799
TU390402 lncRNA upstream 338801 9349466 ~ 9349837 (-) True G329531
TU390570 lncRNA upstream 564719 9575384 ~ 9575695 (-) True G329686
TU390617 lncRNA upstream 611046 9621711 ~ 9622672 (-) True G329722
XM_026923926.2 mRNA downstream 43286 8962772 ~ 8967175 (-) True bloc1s5
XM_026923927.2 mRNA downstream 43286 8964417 ~ 8967175 (-) False bloc1s5
XM_034298134.1 mRNA downstream 55267 8944385 ~ 8955194 (-) True txndc5
XM_026924128.2 mRNA downstream 173630 8830847 ~ 8836831 (-) True si:dkey-197c15.6
XM_026924162.2 mRNA downstream 344606 8652432 ~ 8665855 (-) True cavin1b
XM_034298003.1 mRNA upstream 440709 9451374 ~ 9472412 (-) True mak
XM_034298004.1 mRNA upstream 440709 9451374 ~ 9472391 (-) False mak
XM_026923977.2 mRNA upstream 440710 9451375 ~ 9472412 (-) False mak
XM_026923978.2 mRNA upstream 440712 9451377 ~ 9472412 (-) False mak
XM_034298196.1 mRNA upstream 493472 9504137 ~ 9510189 (-) True gcm2
TU389089 other downstream 1624155 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 1948033 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 2580529 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 3032082 5829474 ~ 5978379 (-) False zfpm2a
XR_003404173.1 other upstream 1274169 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 1512067 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 1912461 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 2071603 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 3665916 12676581 ~ 12677933 (-) False LOC113541288

Expression Profile