RNA id: TU390393



Basic Information


Item Value
RNA id TU390393
length 584
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G329522
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9352150 ~ 9352733 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


gaaaacattccctacaccattacaccacctccaccagtctggactgttgacacaaggcaggttgggtccatggatttatgctgttggtgccaaattctgaccctaccatctgtgtgcctcagcagaaattgagattcctCAGGCCAGGCTGCGTTTTTCaagtcttcatctgtccagttttggtgagcctgtaccCACTGCGATCTCGCCTTTCTGTAATTGgcagacagaagtggaacctgacgtggtcttctgctgttgtagcccatctgcctcaagcttggaagtgttgtgcattctgagatgcttttctgctcaccacaattgtagcagttaattaattaatcagcagttatagaaatactcaaaccagcctgtctggcacaaACAATCATGCCACAATCAAAATCACTTgcgatcacattttttccccattctgattgttgatgtgaacattacctgaagctgctggcccgtagctgcctgattttatgcattgcactgctgccacatgattggctgattacacGTATTCACCAGACATTTTTATTACCGTTGACTTAGAATTGAAATAGGATACAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU390394 lncRNA upstream 16342 9335186 ~ 9335808 (+) True G329523
TU390202 lncRNA upstream 378563 8973237 ~ 8973587 (+) True G329361
TU390192 lncRNA upstream 406594 8942878 ~ 8945556 (+) True G329354
TU390105 lncRNA upstream 603117 8748820 ~ 8749033 (+) True G329288
TU389928 lncRNA upstream 652990 8694403 ~ 8699160 (+) True G329126
XR_004576957.1 lncRNA downstream 119883 9472616 ~ 9482817 (+) True LOC117595781
TU390448 lncRNA downstream 127606 9480339 ~ 9480553 (+) True G329574
TU390455 lncRNA downstream 138541 9491274 ~ 9491545 (+) True G329581
TU390437 lncRNA downstream 212960 9565693 ~ 9568672 (+) True G329564
TU390569 lncRNA downstream 222656 9575389 ~ 9575704 (+) True G329685
XM_026924663.2 mRNA upstream 2644 9333115 ~ 9349506 (+) False slc35b3
XM_026924664.2 mRNA upstream 2644 9333489 ~ 9349506 (+) True slc35b3
XM_026924687.2 mRNA upstream 164074 9082979 ~ 9188076 (+) True ofcc1
XM_026923884.2 mRNA upstream 346930 8993786 ~ 9005220 (+) False tfap2a
XM_026924966.2 mRNA downstream 47509 9400242 ~ 9415382 (+) True eef1e1
XM_026924967.2 mRNA downstream 47509 9400242 ~ 9415382 (+) False eef1e1
XM_026923980.2 mRNA downstream 85565 9438298 ~ 9451343 (+) False tmem14ca
XM_026923979.2 mRNA downstream 85567 9438300 ~ 9451343 (+) True tmem14ca
XM_026923983.2 mRNA downstream 95235 9447968 ~ 9451343 (+) False tmem14ca
TU390118 other upstream 495874 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 532883 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 536590 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 686314 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 867317 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 438951 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1078600 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1242469 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1521476 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1521476 10874209 ~ 10984209 (+) False acad11

Expression Profile