Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU390394 |
| length | 413 |
| lncRNA type | intronic |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G329523 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 9335186 ~ 9335808 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU390202 | lncRNA | upstream | 361599 | 8973237 ~ 8973587 (+) | True | G329361 |
| TU390192 | lncRNA | upstream | 389630 | 8942878 ~ 8945556 (+) | True | G329354 |
| TU390105 | lncRNA | upstream | 586153 | 8748820 ~ 8749033 (+) | True | G329288 |
| TU389928 | lncRNA | upstream | 636026 | 8694403 ~ 8699160 (+) | True | G329126 |
| TU389908 | lncRNA | upstream | 669350 | 8652436 ~ 8665836 (+) | True | G329111 |
| TU390393 | lncRNA | downstream | 16342 | 9352150 ~ 9352733 (+) | True | G329522 |
| XR_004576957.1 | lncRNA | downstream | 136808 | 9472616 ~ 9482817 (+) | True | LOC117595781 |
| TU390448 | lncRNA | downstream | 144531 | 9480339 ~ 9480553 (+) | True | G329574 |
| TU390455 | lncRNA | downstream | 155466 | 9491274 ~ 9491545 (+) | True | G329581 |
| TU390437 | lncRNA | downstream | 229885 | 9565693 ~ 9568672 (+) | True | G329564 |
| XM_026924687.2 | mRNA | upstream | 147110 | 9082979 ~ 9188076 (+) | True | ofcc1 |
| XM_026923884.2 | mRNA | upstream | 329966 | 8993786 ~ 9005220 (+) | False | tfap2a |
| XM_026923883.2 | mRNA | upstream | 329966 | 8995767 ~ 9005220 (+) | False | tfap2a |
| XM_034298291.1 | mRNA | upstream | 329966 | 8996872 ~ 9005220 (+) | False | tfap2a |
| XM_026923885.2 | mRNA | upstream | 329966 | 8997097 ~ 9005220 (+) | True | tfap2a |
| XM_026924966.2 | mRNA | downstream | 64434 | 9400242 ~ 9415382 (+) | True | eef1e1 |
| XM_026924967.2 | mRNA | downstream | 64434 | 9400242 ~ 9415382 (+) | False | eef1e1 |
| XM_026923980.2 | mRNA | downstream | 102490 | 9438298 ~ 9451343 (+) | False | tmem14ca |
| XM_026923979.2 | mRNA | downstream | 102492 | 9438300 ~ 9451343 (+) | True | tmem14ca |
| XM_026923983.2 | mRNA | downstream | 112160 | 9447968 ~ 9451343 (+) | False | tmem14ca |
| TU390118 | other | upstream | 478910 | 8853328 ~ 8856276 (+) | False | bmp6 |
| XR_004576948.1 | other | upstream | 515919 | 8768746 ~ 8819267 (+) | False | LOC113532648 |
| XR_004576949.1 | other | upstream | 519626 | 8768745 ~ 8815560 (+) | False | LOC113532648 |
| TU389909 | other | upstream | 669350 | 8615073 ~ 8665836 (+) | False | G329111 |
| XR_004576973.1 | other | upstream | 850353 | 8388187 ~ 8484833 (+) | False | LOC113532774 |
| TU390686 | other | downstream | 455876 | 9791684 ~ 9792733 (+) | True | G329779 |
| TU390970 | other | downstream | 1095525 | 10431333 ~ 10432864 (+) | True | G330038 |
| TU390999 | other | downstream | 1259394 | 10595202 ~ 10678375 (+) | False | gli3 |
| XR_004576967.1 | other | downstream | 1538401 | 10874209 ~ 10984209 (+) | True | acad11 |
| XR_003404155.2 | other | downstream | 1538401 | 10874209 ~ 10984209 (+) | False | acad11 |
