RNA id: TU390448



Basic Information


Item Value
RNA id TU390448
length 215
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G329574
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9480339 ~ 9480553 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GATAGGATACGTTTttgatacagcaaaaataagctGTATCAAATAGGATACATTTTcgatacagcaaaaataagctGTATCAAATAGGATACATTTttgatacagcaaaaataagcgTTGCCTGAATATGTCACATATTTGGTGGATTTGGCTCTGTAACATTTCGGTCAACAACACACTGGCTGGCAGCATTGTAACCAGAACTTAAAAACTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU390393 lncRNA upstream 127606 9352150 ~ 9352733 (+) True G329522
TU390394 lncRNA upstream 144531 9335186 ~ 9335808 (+) True G329523
TU390202 lncRNA upstream 506752 8973237 ~ 8973587 (+) True G329361
TU390192 lncRNA upstream 534783 8942878 ~ 8945556 (+) True G329354
TU390105 lncRNA upstream 731306 8748820 ~ 8749033 (+) True G329288
TU390455 lncRNA downstream 10721 9491274 ~ 9491545 (+) True G329581
TU390437 lncRNA downstream 85140 9565693 ~ 9568672 (+) True G329564
TU390569 lncRNA downstream 94836 9575389 ~ 9575704 (+) True G329685
TU390573 lncRNA downstream 120055 9600608 ~ 9600840 (+) True G329689
TU390580 lncRNA downstream 196430 9676983 ~ 9679949 (+) False gnal
XM_026923980.2 mRNA upstream 28996 9438298 ~ 9451343 (+) False tmem14ca
XM_026923979.2 mRNA upstream 28996 9438300 ~ 9451343 (+) True tmem14ca
XM_026923983.2 mRNA upstream 28996 9447968 ~ 9451343 (+) False tmem14ca
XM_034298005.1 mRNA upstream 28996 9448135 ~ 9451343 (+) False tmem14ca
XM_026924967.2 mRNA upstream 64957 9400242 ~ 9415382 (+) False eef1e1
XM_034298194.1 mRNA downstream 30055 9510608 ~ 9562189 (+) False sycp2l
XM_026923975.2 mRNA downstream 30056 9510609 ~ 9552504 (+) True sycp2l
XM_034298195.1 mRNA downstream 30056 9510609 ~ 9551720 (+) False sycp2l
XM_026924861.2 mRNA downstream 141126 9621679 ~ 9678201 (+) False gnal
XM_026924859.2 mRNA downstream 141127 9621680 ~ 9687491 (+) True gnal
TU390118 other upstream 624063 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 661072 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 664779 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 814503 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 995506 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 311131 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 950780 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1114649 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1393656 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1393656 10874209 ~ 10984209 (+) False acad11

Expression Profile