RNA id: TU390573


Basic Information

Item Value
RNA id TU390573
length 233
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G329689
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9600608 ~ 9600840 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTACGTGCTTTGCAAATATTGTGCAAAATGCCACAAGCCATAATAATGCGACAAGCACGCTCAGGGGAGTGTCGAATCTCTCCATGAAGGACGTGGAATCTCCTTTTCAGCTGTCCAATTCCTCTCTCCACCACAGGTCTTGTTAGTTTGTGTGCTCTTCATGACGCAAAACCAATAAAAGAACAGCTCACATAAGTCAAGAATGCACTCATTGAACTAAGTTGGTATCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390569 lncRNA upstream 24904 9575389 ~ 9575704 (+) True G329685
TU390437 lncRNA upstream 31936 9565693 ~ 9568672 (+) True G329564
TU390455 lncRNA upstream 109063 9491274 ~ 9491545 (+) True G329581
XR_004576957.1 lncRNA upstream 117791 9472616 ~ 9482817 (+) True LOC117595781
TU390448 lncRNA upstream 120055 9480339 ~ 9480553 (+) True G329574
TU390580 lncRNA downstream 76143 9676983 ~ 9679949 (+) False gnal
XR_004576982.1 lncRNA downstream 94819 9695659 ~ 9714739 (+) True LOC117595805
XR_004576986.1 lncRNA downstream 94819 9695659 ~ 9714739 (+) False LOC117595805
XR_004576983.1 lncRNA downstream 94819 9695659 ~ 9714739 (+) False LOC117595805
XR_004576987.1 lncRNA downstream 94819 9695659 ~ 9714739 (+) False LOC117595805
XM_034298194.1 mRNA upstream 38419 9510608 ~ 9562189 (+) False sycp2l
XM_026923975.2 mRNA upstream 48104 9510609 ~ 9552504 (+) True sycp2l
XM_034298195.1 mRNA upstream 48888 9510609 ~ 9551720 (+) False sycp2l
XM_026923980.2 mRNA upstream 149265 9438298 ~ 9451343 (+) False tmem14ca
XM_026924861.2 mRNA downstream 20839 9621679 ~ 9678201 (+) False gnal
XM_026924859.2 mRNA downstream 20840 9621680 ~ 9687491 (+) True gnal
XM_026924215.2 mRNA downstream 255342 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA downstream 255342 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA downstream 255342 9856182 ~ 9937252 (+) False cdh19
TU390118 other upstream 744332 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 781341 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 785048 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 934772 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 1115775 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 190844 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 830493 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 994362 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1273369 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1273369 10874209 ~ 10984209 (+) False acad11

Expression Profile