RNA id: XM_026924861.2


Basic Information

Item Value
RNA id XM_026924861.2
length 4217
RNA type mRNA
GC content 0.40
exon number 10
gene id gnal
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9621679 ~ 9687491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCCCAGCTAACGTTAGACGGAAAAAAAGCAGCGACGGGGGAAGAGGAGCGAAAGCGGAGCCGTCGGACGTATCCCACTTTCAGCCCTGATCTGCTTCCTCTTACTCCCACTTATTCGCGCGTCGTTCTTCATTCTAAGAGGATGAACATTTTTATACGATTTAACTGATTTAACTGCTCGGATTCTGTTTGAGTTAAAGCGAAACCATATTTTTACCGACGGCGACGGATAAGCGAcggattattttttttcccgccttgttttttttttcgcgTGATCTTTAGTGTAATACTTTACATTAGCGTTCATTCTGTAACGTTGCGTTTGCGCGGAGAGCTTAGCGGAAGATGGGCTGTTTGGGGAACAGCAAGACCGAAGACCAGCGCATTGACGAGAAGGCTCAACGAGAGGCGAATAAAAAGATCGAGAAACAATTACAGAAGGAAAGGCAGGCTTACAAAGCCACACACCGGCTGCTTTTATTAGGGGCTGGAGAATCCGGAAAGAGTACGATTGTCAAGCAGATGAGGATCTTGCACGTCAACGGCTTTAACGCAGAagaaaagaagcagaaaataTTGGATATCCgaaaaaatgtgaaagatgCCATTGTAacAATAGTATCGGCCATGAGCACTTTAATACCCCCAGTGCCACTTGCCAACCCGGACAATCAGTTTCGCGCCGACTATATTAAAAGCATAGCGCCGCTTTCTGACTTTGACTACACAGAGGAGTTTTTTGAGCACGCGAAACAACTTTGGGATGATGAAGGCGTGAAGGCCTGCTTTGAACGGTCCAACGAGTACCAGCTTATCGACTGTGCCCAATActtCCTGGACAGAATCGATTCAGTACGGCAGAATGACTACACACCAACAGACCAGGATTTGCTTAGATGCCGAGTTTTGACTTCAGGGATTTTCGAAACACGATTTCAAGTAGACAAAGTCAACTTTCAcATGTTTGATGTAGGTGGtcagagagatgagagaagaaAGTGGATCCAGTGCTTTAATGATGTGACGGCCATCATTTTTGTGGCAGCCAGCAGCAGTTACAACATGGTGATCAGAGAAGACAACAGCACTAACCGCCTGCGCGAGTCCCTAGATCTGTTCCGCAGTATCTGGAATAACAGATTTTCTCCCAGATTTTGTCAGTTCCCAGTAGCGTGTTCTCCCCAATCACACAGCAGCTACCAACTCCTAGCCATGGatgactgtggcatcatcaggattcaaacttgtgatGACTCCTGATGATAGGGCGTACTCTCTGTTCTTGCACCACTAAAGAGGCccctccccatgtctgtgtggtcATTTGAGTCAAACTAGCGAGAATCACTTTATTACCATTCAATTCAGCACACCAATCTTCAGTAGTGTCTCATAACACTAAAAACTGGGGAAGTTCCATTTGGTAAAGGCAGAGTAGAAGGTAAATCAGTGCATGCTAGTGGGATCTGGAGGTCAAAATGATGAGGTTCAGCTCCTAGTGGATCATGCAGTGGCATTTTGGGTTCCAGTTAACAAATCTGTGCGTTCCAGTGCTTTggaaccttttatttatttctggtaACTGTTTTTTCTGGTAACTGGTAAtcttaaataatgtttttacttAATAAACAAAAAGCAGTCCttatctttttgttttatgGTATAGGCAAAGCTAAGCTCTTTTTAGCTTTttagcacattttttaaataaaattttcttaCAAATAGACAACTTTAGTTGCTgatatgagtaaaaaaaatttcccgaacttcagaatgtgcttgtttctttgttgattttatAACTACAAAGTATTTTTGTATCAGTAATCACTGTAACTAAATCAAACTAAATATTTCTTTGAATGACTTCAGAAAAGTGCGCCAGAGTTTGAGCTTCTTTTGAATCAATTTCCAAAGCAATCACATGGTTGTGTGCTGAAACAAAGTTTTGGACATCGCATGTTTTTAGCAGAATGAATCAAACACCAATACAGTGTTTTAAagcaacgttttttttttttgtttttttttttttttggacacacGCCTCAGAGCTGCAGTATCAAGGGTGACAACTACCGTGCAACTTCCCACAGGTTTTTCTTCTTCCAGGCCATGCCTGTGTTTTGAAAAGATTGTTGGacttcatatgtgtgtgtgtgtctgtgctcatTTCCCCTTCAAAATCTGTCTATTGATCTTGGCCCAGACATGTAATACCTCACTCTAAAAACATTGCAGGCTGCGATGACCATTAGGTACATATATTATACAGCTGTCTGTATGACACAGTGAATGAGCATTTAGAGGTACTGAGACACATGAGTTTGTGTTAAATGTATGTCTTTCCACCTCTCCCCTCATAGCTTCATTAAGCTAATCCTGGGGAAGAGGGAAAAGTTGCTGTTGCTGGCCAGGTACAAATTTGAGCCTGGGTGGTTGGAAAACCTCTTCTCTGGCGTACCAGAGATGACAAAACAGAAAGTATGGGCAAATAGGCTGTGAGAAATTCTAAACACATGAAATAAACTCTTTTTAAACCCTAGCTACATGGCTACATTGTTATGCTATTGCTGCCAAGGTACAAAGTCAGTAGGAAGGTAACCTTTTTGCAAATGTGAgtggccctgatttactaaaggtttgtgtgtaaaaatatgcTTGACaacacctgcaaaaaaaaaaaaaaacattgcaagCTGTTTTACTGACACACTCAACAGAGGATTGCATCGGACATGTGAAGAAAATCACATGgcttgtctgtttttgtgtgtttgcctgatgaatatgaaatttgaagcatttttacataaataagcagaaaaaagaaaaatcggTTGGTGTCAATGCAAATCGATTAATTTTTACTGAGCCTTAAATTCACTTTAGAGTGCAATCGCCATTTAATATGTCCAGAGACCATGTATTATATTGGTGAAAGTTTTCACCATTTGAAGACAAAATTTTACCATTTAGTAAGTCTTAATAATGAGAAAGTTTCTCAAAATGAATCCTTACTCATGGTAATTTTGGTTTAGTAGATATTCATCCCATTTGCACATATCCAAAGCCAACATCATTTAAACAGAGCCTTTGAAAAATTTTCCATTTGCATACACTTTAATAACATAATGCTCAATAATCTCtaaacagttttattcatttatttgtattgtattttaaacaGACCCACCTCATTGTCTTTAATCTGCATTAGTTTCAAAATATTCTGGGAATCTCTTTGATTTAGAGAACAATTAGTTCATACAGAAGCCTcaattaaatattgttttctcTCACTATTTTGCACATGACTTACTTCACGCAATTATACTTTGTAAATCACCCACAAGACAcccactgtctgtgtgtgcagtttatTCCATTGCATATTTTGGCTCTTAGTAAATCAGGATGTCAGTGTAACAGAATAACGCTTAGTTGTGCACATGTTTtgaaagtataaaaataaacttgtcATAACTTCTTTTgctagatacactatattgccaaaagtttgtggacacttggccatcacacccatatgtgctttttgaacttCCCATTTGAAATTTAGCCCCcactttactgttataataaccttcactcttctgggaaggctttcctttagattttgaaatgtggctgtggggatttgcccattcagccagaAGAACATCAGTGAGGTTGGGatctgatgttgggcgaggaggcctggtgtgcaggcagcattccagttcatcccaaaggtgttcaggggGGTTGAACTCAGGTTTTTCCAtgccaaccttggcaaatcatgtcctTATGGACGTTGctgtgtgcacaggggcattgtcatgctagaacaggtttggacccctcagttccagtgaaaggaaatcttaagacattctagacaattctgtgcttcagactttgtggcagtagtttggagaaggcccatatatgagtgtgatggtcaggtgtccacatatggTATCATGGATAACACTTAACGCTTAATGCTATACAAACTAACCAACATTTCTGGGTGTATTTTAATGTGTCGTATaaaattttatgttattttgcCGATGCCTTTTACTTTGATGCTGCATTTATTGCACATCACAATTTGCTTATATCTATCATACTGAAAGCTTTTGTAACcgaatgttaaattaatgttgAAATTACAGCAGGGCCATTtccaggatttaaaa

Function

GO:

id name namespace
GO:0007191 adenylate cyclase-activating dopamine receptor signaling pathway biological_process
GO:0006171 cAMP biosynthetic process biological_process
GO:0007608 sensory perception of smell biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004016 adenylate cyclase activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390573 lncRNA upstream 20839 9600608 ~ 9600840 (+) True G329689
TU390569 lncRNA upstream 45975 9575389 ~ 9575704 (+) True G329685
TU390437 lncRNA upstream 53007 9565693 ~ 9568672 (+) True G329564
TU390455 lncRNA upstream 130134 9491274 ~ 9491545 (+) True G329581
XR_004576957.1 lncRNA upstream 138862 9472616 ~ 9482817 (+) True LOC117595781
XR_004576982.1 lncRNA downstream 17458 9695659 ~ 9714739 (+) True LOC117595805
XR_004576986.1 lncRNA downstream 17458 9695659 ~ 9714739 (+) False LOC117595805
XR_004576983.1 lncRNA downstream 17458 9695659 ~ 9714739 (+) False LOC117595805
XR_004576987.1 lncRNA downstream 17458 9695659 ~ 9714739 (+) False LOC117595805
XR_004576984.1 lncRNA downstream 17458 9695659 ~ 9714739 (+) False LOC117595805
XM_034298194.1 mRNA upstream 59490 9510608 ~ 9562189 (+) False sycp2l
XM_026923975.2 mRNA upstream 69175 9510609 ~ 9552504 (+) True sycp2l
XM_034298195.1 mRNA upstream 69959 9510609 ~ 9551720 (+) False sycp2l
XM_026923980.2 mRNA upstream 170336 9438298 ~ 9451343 (+) False tmem14ca
XM_026923979.2 mRNA upstream 170336 9438300 ~ 9451343 (+) True tmem14ca
XM_026924215.2 mRNA downstream 177981 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA downstream 177981 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA downstream 177981 9856182 ~ 9937252 (+) False cdh19
XM_026938045.2 mRNA downstream 504590 10182791 ~ 10340953 (+) False LOC113541200
XM_034298136.1 mRNA downstream 504590 10182791 ~ 10340953 (+) False LOC113541200
TU390118 other upstream 765403 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 802412 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 806119 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 955843 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 1136846 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 113483 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 753132 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 917001 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1196008 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1196008 10874209 ~ 10984209 (+) False acad11

Expression Profile