RNA id: TU390583


Basic Information

Item Value
RNA id TU390583
length 3651
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G329697
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9719659 ~ 9723811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgctgctgccacatgatcggcggattggataactgcatgaatgtgcagatgtacaggtgttcctattaaagtggacagtgagtgtataacatcaggaacaccaaaaggccacggaagacaactaaagcgGATGGTCGccgaattctttccttgttgaagaaaaaccattcacaacatctagccaattCAAggacactctggaggaggtaggcatagCAAAGTCTATAATCAAgacttcatgaatgtaaatacagacagtttacctcaagatacAAACTACTGTTCAAGAACAGTAGTGTTCAAGAAActacactcaagaacagaaaggccagattagattttgctttaaaaaaaaaactgaacagttCTGATACAAGATtcacttgtaccagaatgatgggaagagaagagtatggaaaaggaaaggattcaaagaaaagaaattaaatgttcttaaatgtccacAGATTTCAGACTTCATGTAgttattgactgcaaaggatctGCATTCCttttaagtattaaaaataatcataatatttatgattatattaatatgtccaattacttttgtgtctgtgaaaatggagggactctgttatagaaaaaaaatggctgtaattcttaaacattaatgcaatatttttgttaacacCCAACAGAAATAGCAGCTGCACCACTACTCCCGGtgaatatatacaatatgtcgatatttacaaaaaaaaatacagcagtgTGACTATTTACAAACCTAGGCAGCAGACAATAACCAAGGGACAGATCAAGCTCACAGTCAGGATAGACACCGTTCGAAACCAGAAATACACAACAAAAGCACAGAATGGATTAACGAGTACAACCACAAATGCAATCGGGTGAGCACAGACAATTCAAAGCTGGGGGCATTGGTTTTCATCACTTCTAAATACTGTTGCCCATTGATGACATCATTCTGGGTCAGAAGTGGCAACACAAGGCTGATGAAGCAGCAGCTGAAGCAGAGTAGGAAGGCCCAGACGTTAGTCTGAAATGGACCAACCTGCAcagccatcatagcaaaactgtatcaattgcagtccgaagccatcttcatggtttctaagtggtaccatccacagtaatctcatgtatctttaggctgtccatatggggctatcctcagcagcagcaagtggtttccaagtgatgagaactccaatcAGAAGTAAGGCATCAGGCcagatcaggcaggtccagagagcagaaggggtcaggatcaatgatatctcaggagtagaatgtgtagctcgacagagagagagagagagaaagagagaaacacagattattaggtattcTTATTGTCAAGTAAtcgttaaggacaatgtacattgtgtgcaaaGTGCAAGCAAGGACTcaggcaagactagctatgacagcataacaaaagggagagccagaaagCAACACAGACACAAGGGTGCCTTGGGTCATAAaccagccagccactccaccttCAACAAACATGAGTGAACGTGGGAGACGCAACAGCATCCAAAAATCCCAGTTCACCACTCTATGCCCGTGAACCCTCTAGATCTGCTCCTTtgcctaagaaaaaactattcacaaaaggcttaactaaataaatgttttcagcctagacttaaacactgagactgtgtctgagtcccaaacactaattcTGGAGACAAATGCAGTGTGGATCAGATAGGGGTGATGtagtcatatcttctggttgtAGTAAGgattctcactgctgcattctggactagctggagcttgtttatgcacctagtggaacatccagacagtaaggcattacaatattccaacctagaggtaacaaacgcatgaactagtttttctgcatcatgttgTGACATTATATTTGTTACCttggcaatatttctgagatgaaagaaggctattctagtaatattatctacaagAGCtccaaatgaaagactggagtcaataatcacaccaaggtcttttactgctgcacttgatgaaaggccatccagagttactatgtagtcagaaagcttacttctaagtgtatgtggtcctagtacacgtacttcttgtcagaattaaatgTAGAAGGAAGTTACTAAGCATCCattgtctaatgtcctttacacattcctcaactttattaagctggttgtctctcatctggctttgctgaaacatacaactgtgtcaTCAACATAACattggaagctaataccatgtttacgaataattttatccagaggtagcatatataaagaaaaaagcagtgggcctaaaacagaactttgtggaacaccaaactttaccttagtatgcttagagaacgatcagtcaaataagacctgagccaggagagggccgttcccttaacttcaacaacattttctagtctatcaaggagaatagcatgatcgatggtgtcaaaagctgcactaagttcaagcaacacaagcaaggagacacagtCCTGATCAAAGACCAGTAGTacgtcatttaccactttaaccagtgctgtctgtgctatgatgaggcttaaatcctgactgatacatttcataaatgttattcctatgtggtatgagcataactgctttGCTACAACctttttctaggatcttggacaGCCGACAGAGGTGGAGGTCAGATTTTTTAATTCATGGATTTGATAACTACTAGTTTAGAAGATTTAcatacatagccagtgctaatggaagaactgattatttttagaagattGCTAATCTGATTGAAGAaccatgtaggtaagggatctagtacacaagttgatgattttgatgaggaaattagtgaaattagttcagtctctcgaAGGGGACTAAAAACATTCTAATTGCTGATctgatatagtgatatatagtgtgtgtatatattgtgtaacCTGTCTGCCTATTGGTATGTTTGTGTGAGGTGGGTGGAAACAGGAGAAACCAGACCAAACCCATGCAGACAAGGGGACATCATctgaaacttcacacagatgGTAAcgtgagctcaggatcaaatcagGGACCGTTATTGTGAGGCAGCAACCATCATCAGTGTGCGACAGACTTCTTTTAAGTCTGATGGTTTGTGAGTAACAGTGcacattttaaaccaaaattcCAATCTCTTTGGTGTCACGCCTATGTAGGTACCATTCATCCACAGATAGGGGGCGCACCATGACTAAAGTACTTTTACAGCAACCAGTAGTACattcacacaaaaatgaaaattgtgtcatcATTACTCACCCTCATATTGTTCCAAGCCTGTATGACCTACTTCTGTGAAATTGCTTTTTGTGCATGGCATGGATAAACCTCCGCTAAATTGACAATGTAGTTTTTGAAAgcattaaaacaattaattgaATTTTGATTTCATGAGCTCATCTGTAACGACGTGCTCGTACACGAAGCGTCGGACTCCTCCACTGGCTCGTTGAAACATGTGCTGCGGAAACTCTCGCGAGAGCGtatagcagcagcagcagctgctgcttcttcttcttcttcttcttcttcttcttcttcctcttcttctgttGTTTACTGGCGGTTGGCAAACAACTTATAGGTGCATTACCGCCACCTTCTGGAGTGGAGTGTGATCAGGATGGCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576982.1 lncRNA upstream 4920 9695659 ~ 9714739 (+) True LOC117595805
XR_004576986.1 lncRNA upstream 4920 9695659 ~ 9714739 (+) False LOC117595805
XR_004576983.1 lncRNA upstream 4920 9695659 ~ 9714739 (+) False LOC117595805
XR_004576987.1 lncRNA upstream 4920 9695659 ~ 9714739 (+) False LOC117595805
XR_004576984.1 lncRNA upstream 4920 9695659 ~ 9714739 (+) False LOC117595805
TU390595 lncRNA downstream 2746 9726557 ~ 9728572 (+) True G329701
TU390593 lncRNA downstream 7126 9730937 ~ 9731833 (+) True G329699
TU390613 lncRNA downstream 8651 9732462 ~ 9732727 (+) True G329718
TU390614 lncRNA downstream 9295 9733106 ~ 9733506 (+) True G329719
TU390615 lncRNA downstream 10124 9733935 ~ 9734139 (+) True G329720
XM_026924859.2 mRNA upstream 32168 9621680 ~ 9687491 (+) True gnal
XM_026924861.2 mRNA upstream 41458 9621679 ~ 9678201 (+) False gnal
XM_034298194.1 mRNA upstream 157470 9510608 ~ 9562189 (+) False sycp2l
XM_026924215.2 mRNA downstream 132371 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA downstream 132371 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA downstream 132371 9856182 ~ 9937252 (+) False cdh19
XM_026938045.2 mRNA downstream 458980 10182791 ~ 10340953 (+) False LOC113541200
XM_034298136.1 mRNA downstream 458980 10182791 ~ 10340953 (+) False LOC113541200
TU390118 other upstream 863383 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 900392 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 904099 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 1053823 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 1234826 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 67873 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 707522 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 871391 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1150398 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1150398 10874209 ~ 10984209 (+) False acad11

Expression Profile