RNA id: TU390615


Basic Information

Item Value
RNA id TU390615
length 205
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G329720
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9733935 ~ 9734139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGCTCTCAGCTTcctataaatattaaaagtgtCTCAGACAGTTTAGTGGTAGCAAATACTCTTAAAATATGGGTTCATTTTAGGAAGCATTTTGGGTTAATCAGACCATCAATTCTGGCACCTATTGTAAACAATTTATCTTTTCTACCATCATGTTCTGATCCAGTTTTTCGTGATTGGTCCTCAAGGGGTCTCAGTACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390614 lncRNA upstream 429 9733106 ~ 9733506 (+) True G329719
TU390613 lncRNA upstream 1208 9732462 ~ 9732727 (+) True G329718
TU390593 lncRNA upstream 2102 9730937 ~ 9731833 (+) True G329699
TU390595 lncRNA upstream 5363 9726557 ~ 9728572 (+) True G329701
TU390583 lncRNA upstream 10124 9719659 ~ 9723811 (+) True G329697
TU390616 lncRNA downstream 1662 9735801 ~ 9736031 (+) True G329721
TU390704 lncRNA downstream 75335 9809474 ~ 9809747 (+) True G329797
TU390724 lncRNA downstream 122109 9856248 ~ 9934112 (+) False cdh19
XR_004576972.1 lncRNA downstream 251283 9985422 ~ 9987589 (+) True LOC117595795
TU390850 lncRNA downstream 404616 10138755 ~ 10138977 (+) True G329933
XM_026924859.2 mRNA upstream 46444 9621680 ~ 9687491 (+) True gnal
XM_026924861.2 mRNA upstream 55734 9621679 ~ 9678201 (+) False gnal
XM_034298194.1 mRNA upstream 171746 9510608 ~ 9562189 (+) False sycp2l
XM_026924215.2 mRNA downstream 122043 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA downstream 122043 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA downstream 122043 9856182 ~ 9937252 (+) False cdh19
XM_026938045.2 mRNA downstream 448652 10182791 ~ 10340953 (+) False LOC113541200
XM_034298136.1 mRNA downstream 448652 10182791 ~ 10340953 (+) False LOC113541200
TU390118 other upstream 877659 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 914668 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 918375 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 1068099 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 1249102 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 57545 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 697194 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 861063 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1140070 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1140070 10874209 ~ 10984209 (+) False acad11

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000081_00250859_00331161.mRNA True 4512 mRNA 0.42 12 CI01000081 248792 ~ 331497 (-)