RNA id: TU390704


Basic Information

Item Value
RNA id TU390704
length 274
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G329797
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9809474 ~ 9809747 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcaactttAACTACACTCACTGCCTGTCTGGAGGAGATAAGGGCATGGATGAATCATAACTTTCTCCAGCTGAACAGCTCAAAAACAGAAGCCATCCTCATTGGTTCCCCTCATCAGATCAGAACATCTACCATAACTTGCATTACATTCTCTGGCCAGGACATCCCCCTATCACCATTAGTTACAAATCTTGGTGTTAGGTTTGACCCTCATTTAACCTTTGaggctcacattaaacatctttgcaaaacatcatttcatcaccTCAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390616 lncRNA upstream 73443 9735801 ~ 9736031 (+) True G329721
TU390615 lncRNA upstream 75335 9733935 ~ 9734139 (+) True G329720
TU390614 lncRNA upstream 75968 9733106 ~ 9733506 (+) True G329719
TU390613 lncRNA upstream 76747 9732462 ~ 9732727 (+) True G329718
TU390593 lncRNA upstream 77641 9730937 ~ 9731833 (+) True G329699
TU390724 lncRNA downstream 46501 9856248 ~ 9934112 (+) False cdh19
XR_004576972.1 lncRNA downstream 175675 9985422 ~ 9987589 (+) True LOC117595795
TU390850 lncRNA downstream 329008 10138755 ~ 10138977 (+) True G329933
TU390859 lncRNA downstream 348608 10158355 ~ 10158585 (+) True G329942
TU390866 lncRNA downstream 354172 10163919 ~ 10164120 (+) True G329949
XM_026924859.2 mRNA upstream 121983 9621680 ~ 9687491 (+) True gnal
XM_026924861.2 mRNA upstream 131273 9621679 ~ 9678201 (+) False gnal
XM_034298194.1 mRNA upstream 247285 9510608 ~ 9562189 (+) False sycp2l
XM_026924215.2 mRNA downstream 46435 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA downstream 46435 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA downstream 46435 9856182 ~ 9937252 (+) False cdh19
XM_026938045.2 mRNA downstream 373044 10182791 ~ 10340953 (+) False LOC113541200
XM_034298136.1 mRNA downstream 373044 10182791 ~ 10340953 (+) False LOC113541200
TU390686 other upstream 16741 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 953198 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 990207 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 993914 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 1143638 8615073 ~ 8665836 (+) False G329111
TU390970 other downstream 621586 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 785455 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1064462 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1064462 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other downstream 1064462 10874209 ~ 10983215 (+) False acad11

Expression Profile