RNA id: XM_026924215.2


Basic Information

Item Value
RNA id XM_026924215.2
length 3526
RNA type mRNA
GC content 0.43
exon number 13
gene id cdh19
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9856182 ~ 9938468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTTTGGGGTGacaaagaagagaggagaaagtAACAGCTGGTCATTGTGAGCCAGATGGCCATTAGCCTTCAAGCGTACTATACATTCTGTCAAGCTGTTTCTCCATTTTAAGCCAGCTGAAAAAATTGGAGTGAGAACAGGAGAGACATTCAGGCAGGATCCCATGGCACATTCCACATCTCAATACTCTACTCTCTCACAGAGGTCCCATGACAAATGATGTCATTATTCTAAAGGAGTACTAACAGACCCCAGATTTCTGACCACATCGtctggaaaaagagagaagaagtaACAGGAAGTAACCAAACAATGAGtggctgttgtgtttttcctgTGATCATCATGATCGCCTTCATGTCTGGTTCTGTGGAGAGTGAGCTAAGACTGTCCAGACAAGGACTGAGTGACAACAAACTCACAGAAGGCCTCCATGGATTCAGAGTCAAACGTGGCTGGATTTGGAACCAACTGTCAGTTGAGGAAGAAGATCCAACTCCAAAAATAATCGGTCAgCTGAAATCAACCTACGACACAGGAGAGTTTGCCATCAGGTATATCCTGTCTGGAGAGGGAGCAGGAGAGATCTTTAAGATTGACGAGTTCAGTGGTGAAATCCATATTCATAAGAGCCTGGACAGGGAAAAGAAGGCATTCTATATGCTCCATGCCGAAGCTATTGACCGCAGAACTGGCCACCCAGTGGAGCCTGAGTCAGAGTTCATCATCAAAGTCCAGGATATCAATGACAATGCTCCACAGTTCATAAATGAACCCTACACATCCAGTATCCCTGAGATGAGTCCAATGGGGACTACAGTGGTTCAAGTGACAGCCATAGATGCAGATGACCCCATGTTTGGAAATAATGCCAAACTCATCTATTCCATTCTGCAAGGAGAGCCCTACTTCTCAGTGGAGCCAAAGACAGGCATAATAGTGACCTCTTGGCCAAACATTGACAGAGAAGCAAGTGAGAAGTACCTTGTTGTAATTCAGGTGAAAGACATGCTCGGAAGTACTGGAGGCTACAGTGCTACAGCAACAGTGACCATCACCCTTACTGATGTGAATGACAATGGGCCCACCTTTCAACATAATCTGTACACATTTGCCATAGTGGAATCAGCACCGGTTGGCACAACAGTTGGTAGTGTCATGGCAGAGGATGCTGATGTTGGAGTGAATGCCAGGATGAACTACACTCTAGATGACCTGGAGGAAAGTGCCACTTTCAGGGTCCAGACAGACCCTGCCACACAGGAGGGTATAGTAATACTGGCCAGAaaccggtttggcaCATTTCAGAAGTGGTCTGTATTCTCGGATAAGCACAACAGAGATGTGGTCCGAGCAGCTGAGCCTTTAGATTATGAGAGCAAGAGGCGCTTTGTGATTGCCATAGAGGCCATCAATTCTTTTGTGGACACACGTTTCCTAAGCATCAATGAATTTCGGGACAGGACAATGCTCAAAATTCTGGTGATGGATGTGGATGAGCCACCTGTCTTTTCTGCACCTTTCTATGAGTGGAAAATTCTAGAGAATGCACTTGTTGGTACATTGGTTGGCACAGTATATGCCAGAGATCCAGATGCTGCCAATAACTCTATCAGGTTTTTCATATCCAATAACATTGAGTTGAAGAATATCTTCAGGATTGACGCCAACAATGGAACAGTGTCCCTGGTCAAACCTTTGGACCGAGAGACTGCAGCATGGCAAAATCTTACTGTCATTGCTAAAGAAATGAGTAAAAGTCAGCTTTCCTCAGTTTCTGTGGTCATTAAAGTCCTAGACGCCAATGACAACATACCCACTCTATATAGGGACTACCAGCCCTATGTGTGTGAGGGCACACAGGCAGGGGAAGTCATCCAGGTTATAAGTGCTGTGGATGCAGATGATCCAGCAGAAggtcatcatttttatttttccatggtGCCAGATAAAAACATTAACCCCAACTTCACCATCAGGGACAACCAAGacAACACAGCAGGCATTTTGACCCGTCGTAGCACATTTACACGTAGTGATCGGATACTGTATCATCTCCCCGTGGTCATAACAGACAGTGGCTCTCCTGCTCTATCCAGCACTACCACTTTCACCatcagtgtatgtgtatgccAGTCTAGAGGGCACTGCCCATCTAGTGGAATGGAAGCTTTGGCTCTCAGCATGCAGGCCCTCCTAGGCCTCTCTATATGCCTCATCACAGTAATAGTGCTTGCTTTACTAATGGTAGCTGTGTGGAGACACAGGACAGTACAACAGCAGAAACTTGCCATCCAGGAACTTGACACAGAGGAGTACTCACAGAAAATCGTACATTACAGTGAGAGTGAAGGTATTCCGGATGCAGCAAGCTCTAGCCATTTAGTCCCactgaggccacacccacaCCGCCGCAAGCACACATTCTGTAGAGAGGAAGTGGTAGCAAGTGTACGCCTGTCTCTATGCCACTCTCACCTTATTGGTCCAGAGGATGAAGTCTTCCGCCAGTTTATGATAGACCGACTGGCTGCGGCTGACCAGGACCCTTGTGTCCCTCCCTTCGACTGCTTGCACACTTATGCTTTTGAGGGTACTGGGTCACTTGCAGGCTCCCTTAGCTCACTGGAATCCTCAAACTTTGACCCTTATTTCAATCGACCCCATGACCCTGGCCCAGGGTTTTTAAGACTATCTCGCTGGCAAGGTGATAATGATTATGAGACTTCATTCTGAACTGAGGAGAAGTTAAGCTAAACTCTATAGGCAGTGACAGAAATCCAGTGAGCCCATCACCATAGTGAAATCTTTGACTTTTGATCCCTTTTTGATCACTTTTTGTATGAAGCTAGAGATGAGATTTAATGCTTGACCAAAGATACATTATGTGTTTGAAATAAATTCATACTCTAGAAACACATCACAGGCTTTGTTAACTCTCTGTGATCATTGACTCTTGTGTTGAGCCTTTCCTGGAACTGAAAAGAATTGGAAGtgtatagaaagaaagaaatactgaCTTTAGAAGCATAtctttattcagtgtttttaatatatttgaatatattcaGGCTGAAGAAGATTTAGGTGAGATCTATACAGATACTGAGGAAAAGCATTTTGACCTTTTGTTAggactgtttttgtttctgagTCAGATATGTTTGatataaaatgtactgtatagtaggtgaattattttttttgttacagaaccatatttttattatcaacTTAGTTAAATGGAATACATAATTCAGTTTTTTACAAATGCAAAACTAACAATATTGTAAAACTATTGTACTGAAAGTGTACAATTCAGTTGAGAATTAACAAATGTCCTTGATTCTGGTTATTGTGTAAAATACAATAGCAGTAAGTATGATAGGCTCTGATGCAGACAGACTTTGATGCAGCTTTGGGACTcactttatctttatttttctcttttttttatcaactAAGTGCTTGTCAGAGCAAATCTTCAAAaccaagagaaataaaattcaGTCCAAACAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390704 lncRNA upstream 46435 9809474 ~ 9809747 (+) True G329797
TU390616 lncRNA upstream 120151 9735801 ~ 9736031 (+) True G329721
TU390615 lncRNA upstream 122043 9733935 ~ 9734139 (+) True G329720
TU390614 lncRNA upstream 122676 9733106 ~ 9733506 (+) True G329719
TU390613 lncRNA upstream 123455 9732462 ~ 9732727 (+) True G329718
XR_004576972.1 lncRNA downstream 46954 9985422 ~ 9987589 (+) True LOC117595795
TU390850 lncRNA downstream 200287 10138755 ~ 10138977 (+) True G329933
TU390859 lncRNA downstream 219887 10158355 ~ 10158585 (+) True G329942
TU390866 lncRNA downstream 225451 10163919 ~ 10164120 (+) True G329949
TU390881 lncRNA downstream 236161 10174629 ~ 10186937 (+) True G329964
XM_026924859.2 mRNA upstream 168691 9621680 ~ 9687491 (+) True gnal
XM_026924861.2 mRNA upstream 177981 9621679 ~ 9678201 (+) False gnal
XM_034298194.1 mRNA upstream 293993 9510608 ~ 9562189 (+) False sycp2l
XM_026923975.2 mRNA upstream 303678 9510609 ~ 9552504 (+) True sycp2l
XM_034298195.1 mRNA upstream 304462 9510609 ~ 9551720 (+) False sycp2l
XM_026938045.2 mRNA downstream 244323 10182791 ~ 10340953 (+) False LOC113541200
XM_034298136.1 mRNA downstream 244323 10182791 ~ 10340953 (+) False LOC113541200
XM_026938046.2 mRNA downstream 244324 10182792 ~ 10341901 (+) True LOC113541200
XM_026938047.2 mRNA downstream 244324 10182792 ~ 10339955 (+) False LOC113541200
XM_026938043.2 mRNA downstream 244325 10182793 ~ 10341901 (+) False LOC113541200
TU390686 other upstream 63449 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 999906 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 1036915 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 1040622 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 1190346 8615073 ~ 8665836 (+) False G329111
TU390970 other downstream 492865 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 656734 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 935741 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 935741 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other downstream 935741 10874209 ~ 10983215 (+) False acad11

Expression Profile