RNA id: TU390859


Basic Information

Item Value
RNA id TU390859
length 231
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G329942
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10158355 ~ 10158585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctccctgagcAGCGCCATTGTTCCCACATGCTTCAAGACAAAGACCATCATCCCAGTGCCTAAGAAGTCTTCAGtctcctgcctcaatgactaccgtcccgttgcactcacacccatcgctatgaagtgcttcgagaggcttgtcatgaggcacatcaaatCCCACCTTCCACACTCACTGGACCCACTGCAGTTTGCGTATCGTCCAAACCGTTCAACAGACGATGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390850 lncRNA upstream 19378 10138755 ~ 10138977 (+) True G329933
XR_004576972.1 lncRNA upstream 170766 9985422 ~ 9987589 (+) True LOC117595795
TU390724 lncRNA upstream 224243 9856248 ~ 9934112 (+) False cdh19
TU390704 lncRNA upstream 348608 9809474 ~ 9809747 (+) True G329797
TU390616 lncRNA upstream 422324 9735801 ~ 9736031 (+) True G329721
TU390866 lncRNA downstream 5334 10163919 ~ 10164120 (+) True G329949
TU390881 lncRNA downstream 16044 10174629 ~ 10186937 (+) True G329964
TU390892 lncRNA downstream 51338 10209923 ~ 10212430 (+) True G329975
TU390893 lncRNA downstream 54678 10213263 ~ 10279967 (+) True G329976
TU390972 lncRNA downstream 203946 10362531 ~ 10374057 (+) True G330040
XM_026924215.2 mRNA upstream 219887 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA upstream 219887 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA upstream 221103 9856182 ~ 9937252 (+) False cdh19
XM_026924859.2 mRNA upstream 470864 9621680 ~ 9687491 (+) True gnal
XM_026924861.2 mRNA upstream 480154 9621679 ~ 9678201 (+) False gnal
XM_026938045.2 mRNA downstream 24206 10182791 ~ 10340953 (+) False LOC113541200
XM_034298136.1 mRNA downstream 24206 10182791 ~ 10340953 (+) False LOC113541200
XM_026938046.2 mRNA downstream 24207 10182792 ~ 10341901 (+) True LOC113541200
XM_026938047.2 mRNA downstream 24207 10182792 ~ 10339955 (+) False LOC113541200
XM_026938043.2 mRNA downstream 24208 10182793 ~ 10341901 (+) False LOC113541200
TU390686 other upstream 365622 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 1302079 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 1339088 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 1342795 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 1492519 8615073 ~ 8665836 (+) False G329111
TU390970 other downstream 272748 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 436617 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 715624 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 715624 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other downstream 715624 10874209 ~ 10983215 (+) False acad11

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU216792 True 360 lncRNA 0.48 1 NC_056719.1 15168198 ~ 15168557 (+)