Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU390892 |
| length | 219 |
| lncRNA type | intronic |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G329975 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 10209923 ~ 10212430 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU390881 | lncRNA | upstream | 22986 | 10174629 ~ 10186937 (+) | True | G329964 |
| TU390866 | lncRNA | upstream | 45803 | 10163919 ~ 10164120 (+) | True | G329949 |
| TU390859 | lncRNA | upstream | 51338 | 10158355 ~ 10158585 (+) | True | G329942 |
| TU390850 | lncRNA | upstream | 70946 | 10138755 ~ 10138977 (+) | True | G329933 |
| XR_004576972.1 | lncRNA | upstream | 222334 | 9985422 ~ 9987589 (+) | True | LOC117595795 |
| TU390893 | lncRNA | downstream | 833 | 10213263 ~ 10279967 (+) | True | G329976 |
| TU390972 | lncRNA | downstream | 150101 | 10362531 ~ 10374057 (+) | True | G330040 |
| TU390975 | lncRNA | downstream | 200347 | 10412777 ~ 10445475 (+) | True | G330043 |
| TU390976 | lncRNA | downstream | 200751 | 10413181 ~ 10461730 (+) | True | G330044 |
| TU390982 | lncRNA | downstream | 240553 | 10452983 ~ 10454904 (+) | True | G330049 |
| XM_026924215.2 | mRNA | upstream | 271455 | 9856182 ~ 9938468 (+) | True | cdh19 |
| XM_026924216.2 | mRNA | upstream | 271455 | 9856182 ~ 9938468 (+) | False | cdh19 |
| XM_026924217.2 | mRNA | upstream | 272671 | 9856182 ~ 9937252 (+) | False | cdh19 |
| XM_026924859.2 | mRNA | upstream | 522432 | 9621680 ~ 9687491 (+) | True | gnal |
| XM_026924861.2 | mRNA | upstream | 531722 | 9621679 ~ 9678201 (+) | False | gnal |
| XM_026938243.2 | mRNA | downstream | 132893 | 10345323 ~ 10386998 (+) | False | tmx3b |
| XM_026938241.2 | mRNA | downstream | 132894 | 10345324 ~ 10426436 (+) | True | tmx3b |
| XM_026938242.2 | mRNA | downstream | 132894 | 10345324 ~ 10426436 (+) | False | tmx3b |
| XM_026938037.2 | mRNA | downstream | 228527 | 10440957 ~ 10477542 (+) | False | lztfl1 |
| XM_026938034.2 | mRNA | downstream | 228531 | 10440961 ~ 10477542 (+) | True | lztfl1 |
| TU390686 | other | upstream | 417190 | 9791684 ~ 9792733 (+) | True | G329779 |
| TU390118 | other | upstream | 1353647 | 8853328 ~ 8856276 (+) | False | bmp6 |
| XR_004576948.1 | other | upstream | 1390656 | 8768746 ~ 8819267 (+) | False | LOC113532648 |
| XR_004576949.1 | other | upstream | 1394363 | 8768745 ~ 8815560 (+) | False | LOC113532648 |
| TU389909 | other | upstream | 1544087 | 8615073 ~ 8665836 (+) | False | G329111 |
| TU390970 | other | downstream | 218903 | 10431333 ~ 10432864 (+) | True | G330038 |
| TU390999 | other | downstream | 382772 | 10595202 ~ 10678375 (+) | False | gli3 |
| XR_004576967.1 | other | downstream | 661779 | 10874209 ~ 10984209 (+) | True | acad11 |
| XR_003404155.2 | other | downstream | 661779 | 10874209 ~ 10984209 (+) | False | acad11 |
| XR_004576968.1 | other | downstream | 661779 | 10874209 ~ 10983215 (+) | False | acad11 |
