RNA id: TU390970


Basic Information

Item Value
RNA id TU390970
length 1482
RNA type TUCP
GC content 0.37
exon number 2
gene id G330038
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10431333 ~ 10432864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actcaaaagtaattggcacaattgactgataagcagttttatGGCCAGCtatggcctgtttccttgttattttaTGACAAATGAAGGAGATAAAGGTCTGGagttccaagtgttgaatttgcatttgctagctgttcatgggaactctcaatatgtggtctaaagaggtgtcgatgcaaataaaggaggccatcattagactgaaaaaacaaaacaggcctatcagagagatagcagaaactttaggagtggccaaatcaacaaatatgctaaaaaaaaagcctcttaaaaaaaaaagtctgcccAGTTCAGgaacaagattaacttgtaccagaatgatgggaagagaagagtatggagtaggaaaggaagggctaatgttccaaaacataccacatcatctgtcaaaaatGGTGgagcagtgttatggcatgggcatgtatggctgccaatggaactgggtcactggtgtttattgatgatgtgactgctgatagaagtagcaggattaATTCTGAAGTGAACAGAGCTATACTTtatgctcagattcagtcaaatgctgcaaaactgataggacggtgCTTTACAGTACAGATATACTGTGCAATAAACATaccgcgaaagcaacccaagagctaagaaattaaatgttcttgaATGTCTGATGACCGCAACCCAGCTGAGCATTTCACTTACTagagacaaaactgaaggcagaaaggcccacaaacaagcagcaactaaaGGTAGCTGTCATAaaggcaaagcatctcaagggaggaaactcagctttcaggcagtcattaactgcaaaggatttgcaaccatgtattaaatataatcctTATAATTAAGTTACTTTtgtgcctgtgaaaatggagggactctgaaaaaatggctgcaattcctaaacggttaatgcaatatttttgttaaaccccttgaattgaagctgaaagtctacattccAATATCATcttaaaatgatgaaaattgtgacactgtccaaatacttatggacctgactatatgtggcagcctgggaaaacacTTCACATGGTGGAATTTTCTAATTGATATTGCTTGGAAAACGAAGAGGCTTTCCtgcactgaaatatgtttctcttttgtatgtATCTCAGGCAAGTGCAGGAGAGAAACTGAAGTCATTTTAATTAAGATTTTGTTTAACTGTATTTTTAGGTTCAGTGGGGGAATAAATAGTTCAAAGAGAAGGGGTGAGTGACTGTACCAGGGTAGAGGATGGGAAACAGAGTAAATATAGGACAGCAATACATGAAATAGAGAACTGTAAATATGTGTACTTATGTAACTGTCAAGACATGTATGTTTCTAGGTTgtatttcttctattttttttttttaagttggcttctttttttaaagttgacttTTTAATTTATAGTTGACTCTTGATCTGTTCACTCTTTTCacttaattcttttttttatttaaaattgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390972 lncRNA upstream 57276 10362531 ~ 10374057 (+) True G330040
TU390893 lncRNA upstream 151366 10213263 ~ 10279967 (+) True G329976
TU390892 lncRNA upstream 218903 10209923 ~ 10212430 (+) True G329975
TU390881 lncRNA upstream 244396 10174629 ~ 10186937 (+) True G329964
TU390866 lncRNA upstream 267213 10163919 ~ 10164120 (+) True G329949
TU390982 lncRNA downstream 20119 10452983 ~ 10454904 (+) True G330049
TU390985 lncRNA downstream 50465 10483329 ~ 10483668 (+) True G330052
TU390989 lncRNA downstream 87027 10519891 ~ 10520607 (+) True G330056
TU390992 lncRNA downstream 100607 10533471 ~ 10533787 (+) True G330059
TU390996 lncRNA downstream 142025 10574889 ~ 10575096 (+) True G330063
XM_026938241.2 mRNA upstream 4897 10345324 ~ 10426436 (+) True tmx3b
XM_026938242.2 mRNA upstream 4897 10345324 ~ 10426436 (+) False tmx3b
XM_026938243.2 mRNA upstream 44335 10345323 ~ 10386998 (+) False tmx3b
XM_026938046.2 mRNA upstream 89432 10182792 ~ 10341901 (+) True LOC113541200
XM_026938043.2 mRNA upstream 89432 10182793 ~ 10341901 (+) False LOC113541200
XM_026938037.2 mRNA downstream 8093 10440957 ~ 10477542 (+) False lztfl1
XM_026938034.2 mRNA downstream 8097 10440961 ~ 10477542 (+) True lztfl1
XM_026938035.2 mRNA downstream 8097 10440961 ~ 10477542 (+) False lztfl1
XM_026938036.2 mRNA downstream 8445 10441309 ~ 10477542 (+) False lztfl1
XM_026937829.2 mRNA downstream 115864 10548728 ~ 10552018 (+) True ccr9b
TU390686 other upstream 638600 9791684 ~ 9792733 (+) True G329779
TU390118 other upstream 1575057 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 1612066 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 1615773 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 1765497 8615073 ~ 8665836 (+) False G329111
TU390999 other downstream 162338 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 441345 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 441345 10874209 ~ 10984209 (+) False acad11
XR_004576968.1 other downstream 441345 10874209 ~ 10983215 (+) False acad11
XR_004576969.1 other downstream 441345 10874209 ~ 10983215 (+) False acad11

Expression Profile